hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00791/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00343 ( 1952 res) mpf00791 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Filamin Filamin/ABP280 repeat 2455.3 0 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Filamin 1/20 1 73 [. 1 101 [] 104.8 1.7e-27 Filamin 2/20 79 176 .. 1 101 [] 144.7 1.6e-39 Filamin 3/20 182 275 .. 1 101 [] 169.3 6.4e-47 Filamin 4/20 281 371 .. 1 101 [] 107.9 1.9e-28 Filamin 5/20 377 464 .. 1 101 [] 174.8 1.4e-48 Filamin 6/20 470 559 .. 1 101 [] 157.2 2.8e-43 Filamin 7/20 565 659 .. 1 101 [] 150.8 2.4e-41 Filamin 8/20 665 752 .. 1 101 [] 173.8 2.8e-48 Filamin 9/20 758 849 .. 1 101 [] 174.3 2e-48 Filamin 10/20 855 946 .. 1 101 [] 175.3 9.8e-49 Filamin 11/20 952 1042 .. 1 101 [] 92.0 1.2e-23 Filamin 12/20 1078 1162 .. 1 101 [] 5.6 0.00045 Filamin 13/20 1167 1254 .. 1 101 [] 177.7 1.8e-49 Filamin 14/20 1266 1341 .. 1 101 [] 8.1 0.00028 Filamin 15/20 1349 1436 .. 1 101 [] 171.1 1.9e-47 Filamin 16/20 1462 1532 .. 1 101 [] 8.1 0.00028 Filamin 17/20 1540 1627 .. 1 101 [] 163.1 4.6e-45 Filamin 18/20 1634 1722 .. 1 101 [] 124.9 1.5e-33 Filamin 19/20 1731 1818 .. 1 101 [] 142.4 8e-39 Filamin 20/20 1859 1948 .. 1 101 [] 137.4 2.6e-37 Alignments of top-scoring domains: Filamin: domain 1 of 20, from 1 to 73: score 104.8, E = 1.7e-27 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs v+kPaeFtVd+ k+AG+++L mFLJ00343 1 -------------------AVNKPAEFTVDA-------KHAGKAPLR 21 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V+V++ +G+ ve+ v+Dng+GtY++sY+P++p +t +V +gG+ IP+ mFLJ00343 22 VQVQDNEGC--SVEATVKDNGNGTYSCSYVPRKPVKHTAMVSWGGVSIPN 69 SPFk<-* SPF+ mFLJ00343 70 SPFR 73 Filamin: domain 2 of 20, from 79 to 176: score 144.7, E = 1.6e-39 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +++++KVk+yGPG+ ++G+k+++P++FtVd+ +AG+G++s mFLJ00343 79 GSHPNKVKVYGPGVAKTGLKAHEPTYFTVDC-------TEAGQGDVS 118 VkVeGPsGa....eAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGe ++++++ G+ +++eA+++++++ n+++t+tV+YtP +G+Yt++V+++++ mFLJ00343 119 IGIKCAPGVvgptEADIDFDIIRNDNDTFTVKYTPCGAGSYTIMVLFADQ 168 hIPgSPFk<-* + P SP++ mFLJ00343 169 ATPTSPIR 176 Filamin: domain 3 of 20, from 182 to 275: score 169.3, E = 6.4e-47 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++DasKVkA+GPGL ++GV+ gkP++FtV++ k+AG+G+L+ mFLJ00343 182 SHDASKVKAEGPGLNRTGVELGKPTHFTVNA-------KTAGKGKLD 221 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V+ +G ++ +Av++v+++D++D tYtV+Y+P ++G+ vnVtygG+hIP+ mFLJ00343 222 VQFSGLAKGDAVRDVDIIDHHDNTYTVKYIPVQQGPVGVNVTYGGDHIPK 271 SPFk<-* SPF+ mFLJ00343 272 SPFS 275 Filamin: domain 4 of 20, from 281 to 371: score 107.9, E = 1.9e-28 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++D sK+k++G+G vgk +eFtV++ + ++G+G+++ mFLJ00343 281 SLDLSKIKVSGLGDKVD---VGKDQEFTVKS------KGAGGQGKVA 318 VkVeGPsGaeAvvevkvtDngD.GtYtVsYtPtepGdYtvnVtygGehIP k+++PsGa +v++kv+ + V+++P+e+G+Y+v+Vty+G+++P mFLJ00343 319 SKIVSPSGA--AVPCKVEPGLGaDNSVVRFVPREEGPYEVEVTYDGVPVP 366 gSPFk<-* gSPF mFLJ00343 367 GSPFP 371 Filamin: domain 5 of 20, from 377 to 464: score 174.8, E = 1.4e-48 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++ +sKVkA GPGL+gg +g Pa Ft+dt kgAG+GgL+ mFLJ00343 377 PTKPSKVKAFGPGLQGG--NAGSPARFTIDT-------KGAGTGGLG 414 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++VeGP++a + ++ DngDGt++VsY+PtepGdY++n++++++hIPg mFLJ00343 415 LTVEGPCEA----QLECLDNGDGTCSVSYVPTEPGDYNINILFADTHIPG 460 SPFk<-* SPFk mFLJ00343 461 SPFK 464 Filamin: domain 6 of 20, from 470 to 559: score 157.2, E = 2.8e-43 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++DasKVk++GPGLe++ ++g+ +F+Vd+ ++AG+++L+ mFLJ00343 470 CFDASKVKCSGPGLERA--TAGEVGQFQVDC-------SSAGSAELT 507 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg + +++ +G+ + ev+++D+gDGt+t++Y+P +pG Ytv+++ygG+++P+ mFLJ00343 508 IEICSEAGL--PAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGGQPVPN 555 SPFk<-* +P k mFLJ00343 556 FPSK 559 Filamin: domain 7 of 20, from 565 to 659: score 150.8, E = 2.4e-41 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs a+D s V++yGPG+eg+GV+ +++eF+Vd+ +++ + Gg +++ mFLJ00343 565 AVDTSGVQCYGPGIEGQGVFREATTEFSVDA----RALTQTGGPHVK 607 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg + V +PsG+ +++++v+D+gDGtY V+YtP+e+G+++v+Vty+G ++P mFLJ00343 608 ARVANPSGN--LTDTYVQDCGDGTYKVEYTPYEEGVHSVDVTYDGSPVPS 655 SPFk<-* SPF+ mFLJ00343 656 SPFQ 659 Filamin: domain 8 of 20, from 665 to 752: score 173.8, E = 2.8e-48 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++D+s+V+++GPG++ g +++kP +FtV+t +gAG+GgL+ mFLJ00343 665 GCDPSRVRVHGPGIQSG--TTNKPNKFTVET-------RGAGTGGLG 702 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++VeGPs+a +++++Dn+DG+++V+Y+P+e+G+Y+ nVtygG+++Pg mFLJ00343 703 LAVEGPSEA----KMSCMDNKDGSCSVEYIPYEAGTYSLNVTYGGHQVPG 748 SPFk<-* SPFk mFLJ00343 749 SPFK 752 Filamin: domain 9 of 20, from 758 to 849: score 174.3, E = 2e-48 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +DasKVk++GPGL++g+V+++ P++F+Vdt ++AG+++L+ mFLJ00343 758 VTDASKVKCSGPGLSPGMVRANLPQSFQVDT-------SKAGVAPLQ 797 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg VkV+GP+G+ v++v+v+Dn DGt tV Y+P +G+Y+++V+yg+e++P+ mFLJ00343 798 VKVQGPKGL--VEPVDVVDNADGTQTVNYVPSREGSYSISVLYGEEEVPR 845 SPFk<-* SPFk mFLJ00343 846 SPFK 849 Filamin: domain 10 of 20, from 855 to 946: score 175.3, E = 9.8e-49 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++DasKVkA+GPGL +GV + P eFt+d+ k+AG+G L+ mFLJ00343 855 THDASKVKASGPGLNTTGVPASLPVEFTIDA-------KDAGEGLLA 894 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V++ +P+G +++++++Dn+DGtYtV+Y+P +pG Yt+ ++ygG++IP mFLJ00343 895 VQITDPEGK--PKKTHIQDNHDGTYTVAYVPDVPGRYTILIKYGGDEIPF 942 SPFk<-* SP++ mFLJ00343 943 SPYR 946 Filamin: domain 11 of 20, from 952 to 1042: score 92.0, E = 1.2e-23 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gDasK+++ G G+ ++ + g+ + tVdt k+AG+G+++ mFLJ00343 952 TGDASKCTVTGAGIGPT-IQIGEETVITVDT-------KAAGKGKVT 990 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +V+ P+G +v+v+v++n DGt+++ Yt+ +pG Y + V +gGeh+P+ mFLJ00343 991 CTVCTPDGS--EVDVDVVENEDGTFDIFYTAPQPGKYVICVRFGGEHVPN 1038 SPFk<-* SPF+ mFLJ00343 1039 SPFQ 1042 Filamin: domain 12 of 20, from 1078 to 1162: score 5.6, E = 0.00045 *->agDasKVkAyGPGLeggGVkvg.kPaeFtVdtVdkdGepkgAGgGgL +++ + GL + ++ ++ Ft++ G+ mFLJ00343 1078 ---PERPMVGVNGLDVTSLRPFdLVIPFTIKK------------GEI 1109 sVkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIP + V PsG v ++++tDn+DGt tV+Y P e+G ++ ++ y+ hIP mFLJ00343 1110 TGEVRMPSGK--VAQPSITDNKDGTVTVRYSPSEAGLHEMDIRYDNMHIP 1157 gSPFk<-* gSP + mFLJ00343 1158 GSPLQ 1162 Filamin: domain 13 of 20, from 1167 to 1254: score 177.7, E = 1.8e-49 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +++ +++AyGPGL +g +v+kPa FtV+t k+AG+GgLs mFLJ00343 1167 YVNCGHITAYGPGLTHG--VVNKPATFTVNT-------KDAGEGGLS 1204 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +++eGPs+a e+++tDn+DGt++VsY+P pGdY++ V+y+++hIPg mFLJ00343 1205 LAIEGPSKA----EISCTDNQDGTCSVSYLPVLPGDYSILVKYNDQHIPG 1250 SPFk<-* SPF+ mFLJ00343 1251 SPFT 1254 Filamin: domain 14 of 20, from 1266 to 1341: score 8.1, E = 0.00028 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++ kvg a+ ++ ++ L+ mFLJ00343 1266 --------------SHL--KVGSAADIPINI-------SETDLSLLT 1289 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++V+ PsG ++++ ++ +G ++s++P+e+G++ v+V+ +G+h++ mFLJ00343 1290 ATVVPPSGR--EEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVAS 1337 SPFk<-* SP+ mFLJ00343 1338 SPIP 1341 Filamin: domain 15 of 20, from 1349 to 1436: score 171.1, E = 1.9e-47 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs gDas+V+++G GL+ g ++++PaeF +dt ++AG GgLs mFLJ00343 1349 IGDASRVRVSGQGLHEG--HTFEPAEFIIDT-------RDAGYGGLS 1386 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +++eGPs++ ++ +D DGt++V+Y+PtepG+Y++n++++++h+Pg mFLJ00343 1387 LSIEGPSKV----DINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPG 1432 SPFk<-* SPF+ mFLJ00343 1433 SPFS 1436 Filamin: domain 16 of 20, from 1462 to 1532: score 8.1, E = 0.00028 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++++ + L + + + mFLJ00343 1462 GSHCDLS------LKIP----------EISI------------QDMT 1480 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++V +PsG + e+++++ + tY ++++P e G +tv+V+y G+h+Pg mFLJ00343 1481 AQVTSPSGK--THEAEIVEGENHTYCIRFVPAEMGMHTVSVKYKGQHVPG 1528 SPFk<-* SPF+ mFLJ00343 1529 SPFQ 1532 Filamin: domain 17 of 20, from 1540 to 1627: score 163.1, E = 4.6e-45 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +g+a+KV+A GPGLe++ ++g+PaeF ++t ++AG+GgL+ mFLJ00343 1540 EGGAHKVRAGGPGLERA--EAGVPAEFGIWT-------REAGAGGLA 1577 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++VeGPs+a e++ +D++DG+++V+Y+ +epGdY+v+V++++ehIP+ mFLJ00343 1578 IAVEGPSKA----EISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPD 1623 SPFk<-* SPF mFLJ00343 1624 SPFV 1627 Filamin: domain 18 of 20, from 1634 to 1722: score 124.9, E = 1.5e-33 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gDa + +++ ++++g kv++Pa+F V ++ +G+ + mFLJ00343 1634 SGDARRLTVSSLQESGL--KVNQPASFAVSL--------NGAKGAID 1670 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +kV++PsGa ++e++vt+ +++ Y V+++P+e+G Y ++V+++G+hIPg mFLJ00343 1671 AKVHSPSGA--LEECYVTEIDQDKYAVRFIPRENGIYLIDVKFNGTHIPG 1718 SPFk<-* SPFk mFLJ00343 1719 SPFK 1722 Filamin: domain 19 of 20, from 1731 to 1818: score 142.4, E = 8e-39 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gD+ V AyG GLegg ++g PaeF V+t ++AG+G+Ls mFLJ00343 1731 GGDPGLVSAYGAGLEGG--VTGSPAEFIVNT-------SNAGAGALS 1768 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGe.hIP V++ GPs++ +++++++ G Y+V+YtP+ pG+Y ++++ygG hI+ mFLJ00343 1769 VTIDGPSKV----KMDCQECPEG-YRVTYTPMAPGSYLISIKYGGPyHIG 1813 gSPFk<-* gSPFk mFLJ00343 1814 GSPFK 1818 Filamin: domain 20 of 20, from 1859 to 1948: score 137.4, E = 2.6e-37 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++D sKV A G+GL+++ +vg+ + FtVd+ ++AG+++L mFLJ00343 1859 PADVSKVVAKGLGLSKA--YVGQKSNFTVDC-------SKAGNNMLL 1896 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V+V+GP + ++e+ v++ g + Y+VsY+ + G+Yt +V++g+ehIPg mFLJ00343 1897 VGVHGPRTP--CEEILVKHMGSRLYSVSYLLKDKGEYTLVVKWGDEHIPG 1944 SPFk<-* SP++ mFLJ00343 1945 SPYR 1948 //