hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth00885/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00334  ( 835 res)   mth00885

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
DPPIV_N      Dipeptidyl peptidase IV (DPP IV) N-termi   482.8   2.7e-141   1
Peptidase_S9 Prolyl oligopeptidase family               150.2    3.6e-41   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DPPIV_N        1/1      78   571 ..     1   495 []   482.8 2.7e-141
Peptidase_S9   1/1     589   834 ..     1   229 []   150.2  3.6e-41

Alignments of top-scoring domains:
DPPIV_N: domain 1 of 1, from 78 to 571: score 482.8, E = 2.7e-141
                   *->SpDgkylLlatnyekiwRhSytasYyiyDletgkvtvepLppgdvee
                      S  g +l++a+n+  ++R+  + ++++ +++    +++++++g    
   mFLJ00334    78    SESGLFLFQASNSLFHCRDGGKNGFMVSPMKPL--EIKTQCSG---- 118  

                   neegkiqyakwSPdaGnklAfVrdNNLYvkelatgdgketqiTsDG....
                       + +++k +P++  +++f+++++L+v + +tg++++++ +++G+ + 
   mFLJ00334   119 ----PRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGsagv 164  

                   ksngifNGlpDWVYEEVEvfgrnsalWWSPDGs..........rLAflrf
                    +n  + G++ +V +E E f+r++++WW+P+ s +++++ ++ r+ ++++
   mFLJ00334   165 LDNPKSAGVATFVIQE-E-FDRFTGCWWCPTASwegseglktlRILYEEV 212  

                   DeseVpeytlpyygddespppleqYPkvrsikfYPKAGapNPtVtLfvvd
                   DeseV+++++p+++ +e+        k+ s++ YP++G++NP++ L++ +
   mFLJ00334   213 DESEVEVIHVPSPALEER--------KTDSYR-YPRTGSKNPKIALKLAE 253  

                   l.tdasgktilpmd.eeivppddlsdanDyYitrVkWlvsdtkrllvqwl
                   l+td++gk+++ +++e ++p+++l+++  +Yi+r  W ++d+k+ + ++l
   mFLJ00334   254 LqTDHQGKIVSSCEkELVQPFSSLFPK-VEYIARAGW-TRDGKYAWAMFL 301  

                   nRdQnvldlvlcdyDtf...........eskgrtvvlcpkpvehyeetsd
                   +R Q++l+lvl ++ +f +  +++ +++++  r+v+++++p+++yee+++
   mFLJ00334   302 DRPQQRLQLVLLPPALFipaveseaqrqAA-ARAVPKNVQPFVIYEEVTN 350  

                   gWvghrelhhsplfippnpalkrdgggflwisedrdGgrGykHLylydld
                    W+   ++h++++++p++++  +++ +fl++ e+++G   ++HLy++++ 
   mFLJ00334   351 VWI---NVHDIFHPFPQAEG--QQDFCFLRANECKTG---FCHLYRVTVE 392  

                   gkss..................pr.ivqlTsGnWeV....tsgilgvDek
                    k ++ + +++ ++++++ + +++++v+lTsG+WeV ++++s  ++v+e+
   mFLJ00334   393 LKTKdydwteplsptedefkcpIKeEVALTSGEWEVlsrhGS-KIWVNEQ 441  

                   rglvYFtAteyEdsgdPgerhLYsVslkstsggeptcLTcdsgdhrCtyy
                   ++lvYF++t+  d+  P+e+hLY+Vs++  s ge+++LT  +  h     
   mFLJ00334   442 TKLVYFQGTK--DT--PLEHHLYVVSYE--SAGEIVRLTTLGFFH----- 480  

                   sasFSpdgkyyvltysgPdtPpqvllntasgkvkgkelrtLedNdalkek
                   s+s+S++++++v +ys+ +tPp+v+++  sg        +L+++  +++ 
   mFLJ00334   481 SCSMSQSFDMFVSHYSSVSTPPCVHVYKLSG----PDDDPLHKQPRFWAS 526  

                   lkyAygyalPsvefgtikiF.De.adGftdlnymlikPpdFdpalKKYPv
                   +    ++a ++++++  +iF+++++ +++ l++m++kP+ ++p+ +K+P+
   mFLJ00334   527 MM---EAANCPPDYVPPEIFhFHtRADVQ-LYGMIYKPHTLQPG-RKHPT 571  

                   <-*
                      
   mFLJ00334     -     -    

Peptidase_S9: domain 1 of 1, from 589 to 834: score 150.2, E = 3.6e-41
                   *->psfsvwnlqlladrGyvvavaniRGsggyGrawhdagkrdlgqnefd
                       +  + +l  la++Gy+v+v+++RGs  +G  ++ a+k ++gq+e++
   mFLJ00334   589    KGIKYLRLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIE 635  

                   DfiaaaeyLieqgpyvDpdrlaiwGgSyGGyltgaalnkqrpdl......
                   D++++++y++e+++++D +r+ai+G+SyGG+l+++ l  ++p++ +  ++
   mFLJ00334   636 DQVEGLQYVAEKYGFIDLSRVAIHGWSYGGFLSLMGLI-HKPQVvqaapr 684  

                   ..................................FkaavavvpvvDwlty
                   ++ +     +++++++ +++   +++ ++++ ++  +a+a++pv+ w +y
   mFLJ00334   685 grvplliachhrpqdgirqqlyvggqardprlggAEVAIAGAPVTVWMAY 734  

                   msdtslpysfteaeymewgnpwdeneegYrylspyspydnvkaqaypplL
                   ++       +te +ym+   p++ n +gY++ s + ++++ ++++ ++lL
   mFLJ00334   735 DTG------YTE-RYMD--VPEN-NQQGYEAGSVALHVEK-LPNEPNRLL 773  

                   lihGlhDdRVpyqealklvaaLqalktGknpflllifpdeGHdLSgggkp
                   ++hG +D +V++ ++  lv  L+  ++Gk+ ++l+i+p+e+H   +++  
   mFLJ00334   774 ILHGFLDENVHFFHTNFLVSQLI--RAGKP-YQLQIYPNERH---SIRCR 817  

                   rnkrlkeyarllaFllkvlggt<-*
                   +  + ++  +ll+Fl+++       
   mFLJ00334   818 ESGE-HYEVTLLHFLQEH----    834  

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