hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msk/msk03045/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00332  ( 439 res)   msk03045

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   172.4    4.4e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1      99   296 ..     1   310 []   172.4  4.4e-47

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 99 to 296: score 172.4, E = 4.4e-47
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      +rkG+p+ lR+++W+lL++a +m+ +n                    
   mFLJ00332    99    CRKGIPSALRARCWPLLCGA-RMCQKN-------------------- 124  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                    +++ Y++l       +  ++                             
   mFLJ00332   125 -NPGTYQELAAAPGDPQWMET----------------------------- 144  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                     I +Dl+R fp +++F ++             +g gq+ L +vLkaY l
   mFLJ00332   145 --IGRDLHRQFPLHEMFVSP-------------QGHGQQGLLQVLKAYTL 179  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   y+pe   gYcQ  + +aa+LL+++   ++e+AFwc+v+++e ylp ++  
   mFLJ00332   180 YRPE--QGYCQAQGPVAAVLLMHL---PPEEAFWCLVQICEVYLPGYY-- 222  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                          p +                 lP +ykHLq+             
   mFLJ00332   223 ------GPHM-----------------LPRVYKHLQQV------------ 237  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                   ++ p+ly+ +WfL+lF+r lP+++vlRiwD +++e    g ++lf+++l+
   mFLJ00332   238 GVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSE----GAKVLFRVGLT 283  

                   iLklnedkllkld<-*
                   +++l      +     
   mFLJ00332   284 LMRLALGTVEQRT    296  

//