hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk03045/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00332  ( 439 res)   msk03045

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     104.9    1.6e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1      99   298 ..     1   219 []   104.9  1.6e-27

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 99 to 298: score 104.9, E = 1.6e-27
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                       + G ps  ra  W ++ gA   +  ++g Y +l      +     +
   mFLJ00332    99    CRKGIPSALRARCWPLLCGARMCQKNNPGTYQELAAAPGDPQWM--E 143  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    I +D+ R  +    F s  +G g++ L  vL AY   +P+ gYcQ+   
   mFLJ00332   144 TIGRDLHRQFPLHEMFVSP-QGHGQQGLLQVLKAYTLYRPEQGYCQAQGP 192  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   vaA +L+     e+AF++L +++e ++P+ Yy p +              
   mFLJ00332   193 VAAVLLMHL-PPEEAFWCLVQICEVYLPG-YYGPHM-------------- 226  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                      lpr+Y +L + gv    +   wfL L++ +lP    lrI+D +  +G
   mFLJ00332   227 ---LPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEG 273  

                   ivllfrvaLAvLkil...keqiLda<-*
                     +lfrv L+ +    ++ eq  ++   
   mFLJ00332   274 AKVLFRVGLTLMRLAlgtVEQRTAC    298  

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