hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/msh/msh02335/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00331 ( 229 res) msh02335 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BTB Broad-Complex, Tramtrack and Bric a brac 43.5 2.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 104 195 .. 1 114 [] 43.5 2.9e-08 Alignments of top-scoring domains: BTB: domain 1 of 1, from 104 to 195: score 43.5, E = 2.9e-08 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. +Dv++vv g k f+a H+++L a+ S+yF +++ ++ mFLJ00331 104 SDVVFVVHG---------KPFRA--HRCILGAR---STYFANMLDTk 136 ......ieldDeallievspeaFralLnflYt..kldlpeedvenveelL ++++ + l + + ++p aF+alL++lYt++ l + + ++ L mFLJ00331 137 wkgksvVVLRH----PLINPVAFGALLQYLYTgkVLTIEPP---PADPRL 179 elAdfldSYGqiplvelCeefllknl<-* ++ l l ++l + l mFLJ00331 180 RADMAL----------LADCALPSEL 195 //