hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh02335/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00331  ( 229 res)   msh02335

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  67.9    2.2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      94   199 ..     1   135 []    67.9  2.2e-16

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 94 to 199: score 67.9, E = 2.2e-16
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l+ l+eqg+++DV++vv         gk f+AH+++L a+S+YF ++
   mFLJ00331    94    LQRLLEQGIHSDVVFVVH--------GKPFRAHRCILGARSTYFANM 132  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   +  ++      + +sv+ ++  + ++p +f+alL+++Ytg++        
   mFLJ00331   133 LDTKW------KGKSVV-VLRHPLINPVAFGALLQYLYTGKVLTI----- 170  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                        ++  ++  L++    l  ++   +  + l   l   
   mFLJ00331   171 -----EPPPADPRLRAD-MALLADC---ALPSELRGDL    199  

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