hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mid/mid41093/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00327 ( 881 res) mid41093 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RNB RNB-like protein 341.8 7.7e-99 1 OB_RNB Ribonuclease B OB domain 9.4 0.008 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- OB_RNB 1/1 82 143 .. 1 60 [] 9.4 0.008 RNB 1/1 381 619 .. 1 248 [] 341.8 7.7e-99 Alignments of top-scoring domains: OB_RNB: domain 1 of 1, from 82 to 143: score 9.4, E = 0.008 *->GtvqghkkGF..GFl.ipDdegedDiFI.PpeqmkkamhGDrVlVri G++++++k F+++F ++pD+ + DiFI+ ++a++GD V+V++ mFLJ00327 82 GVLRINPKKFheAFIpSPDG--DRDIFIdGVVARNRALNGDLVVVKL 126 tkegdrrgrregrivri<-* +e +++ ++ + mFLJ00327 127 LPEDQWKAVKPESNDKE 143 RNB: domain 1 of 1, from 381 to 619: score 341.8, E = 7.7e-99 *->rDlrdllivTIkDpetarDfWvDDAlsvkkldnntdGtyeLgVHIAD rDlr++ i+TI Dp+tarD+ DDAl +++l + Gt+e+gVHIAD mFLJ00327 381 RDLRKDCIFTI-DPSTARDL--DDALACRRLTD---GTFEVGVHIAD 421 VthyVkpgSsLDkEAakRgtsvYLPqkYvvPMLPeeLsdglCSLkpnedR V+++V++gSsLDk Aa+R+tsvYL+qk vvPMLP++L+++lCSL+p d mFLJ00327 422 VSYFVPEGSSLDKVAAERATSVYLVQK-VVPMLPRLLCEELCSLNPMTDK 470 lalScemtlDesGkeikdvkigpSvIrskarltYeevdeiLetke.es.a l++S++++l+ +G +i ++g+ +Irs+ +l+Y++++ ++e++ + + mFLJ00327 471 LTFSVIWKLTPEG-KILEEWFGRTIIRSCTKLSYDHAQSMIENPTeKIpE 519 .t.kdesldseseplvesLrllfelakklrkkRlkrGlaldlFespelkf ++ +++s+++ e++ ++++ l+ +ak lr++R+ G al+l + + l f mFLJ00327 520 eElPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDG-ALRL-DQLKLAF 567 slDdeegpiepieieieersdaesllieEfMllANeaVArhlyeefgipa lD e g p+ ++i+e +d+++l +eEfMllAN+aVA ++ f+++a mFLJ00327 568 TLDHETG--LPQGCHIYEYRDSNKL-VEEFMLLANMAVAHKIFRTFPEQA 614 lyRrH<-* l+RrH mFLJ00327 615 LLRRH 619 //