hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbj/mbj00894/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00324 ( 348 res) mbj00894 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM RNA recognition motif 161.6 7.6e-44 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RRM 1/2 23 98 .. 1 121 [] 73.9 2e-17 RRM 2/2 264 337 .. 1 121 [] 87.7 1.3e-21 Alignments of top-scoring domains: RRM: domain 1 of 2, from 23 to 98: score 73.9, E = 2e-17 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +lfVg L ++ eed+r+lF ++fG+++++ + mFLJ00324 23 KLFVGML--GKQQGEEDVRRLF--------------QPFGHIEECTV 53 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli +r +d G skG+aFV+F ++ +A++A i mFLJ00324 54 LRSPD----------------------GTSKGCAFVKFGSQGEAQAA--I 79 ealnaskGkeledgGrptlglrVe<-* + l++s+ ++ l V+ mFLJ00324 80 QGLHGSRTMTG--ASSS---LVVK 98 RRM: domain 2 of 2, from 264 to 337: score 87.7, E = 1.3e-21 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +lf+ L p + + +L + F +fG vvs+++ mFLJ00324 264 NLFIYHL--PQEFGDAELIQTF--------------LPFGAVVSAKV 294 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli + d+ T++sk+f+FV F+++ +A+ A i mFLJ00324 295 FVDRA---------------------TNQSKCFGFVSFDNPTSAQTA--I 321 ealnaskGkeledgGrptlglrVe<-* +a+n G+++ g ++ l+V+ mFLJ00324 322 QAMN---GFQI--GMKR---LKVQ 337 //