hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00894/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00324  ( 348 res)   mbj00894

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                          161.6    7.6e-44   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/2      23    98 ..     1   121 []    73.9    2e-17
RRM        2/2     264   337 ..     1   121 []    87.7  1.3e-21

Alignments of top-scoring domains:
RRM: domain 1 of 2, from 23 to 98: score 73.9, E = 2e-17
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lfVg L   ++  eed+r+lF              ++fG+++++ +
   mFLJ00324    23    KLFVGML--GKQQGEEDVRRLF--------------QPFGHIEECTV 53   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r +d                      G skG+aFV+F ++ +A++A  i
   mFLJ00324    54 LRSPD----------------------GTSKGCAFVKFGSQGEAQAA--I 79   

                   ealnaskGkeledgGrptlglrVe<-*
                   + l++s+ ++          l V+   
   mFLJ00324    80 QGLHGSRTMTG--ASSS---LVVK    98   

RRM: domain 2 of 2, from 264 to 337: score 87.7, E = 1.3e-21
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+  L  p +  + +L + F               +fG vvs+++
   mFLJ00324   264    NLFIYHL--PQEFGDAELIQTF--------------LPFGAVVSAKV 294  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + d+                      T++sk+f+FV F+++ +A+ A  i
   mFLJ00324   295 FVDRA---------------------TNQSKCFGFVSFDNPTSAQTA--I 321  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a+n   G+++  g ++   l+V+   
   mFLJ00324   322 QAMN---GFQI--GMKR---LKVQ    337  

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