hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00894/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00324  ( 348 res)   mbj00894

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or    141.2    1.9e-38   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/2      24    95 ..     1    74 []    61.1  2.4e-14
RRM_1      2/2     265   336 ..     1    74 []    80.0  4.8e-20

Alignments of top-scoring domains:
RRM_1: domain 1 of 2, from 24 to 95: score 61.1, E = 2.4e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L +   eed+++lF++fG ie++ + r   +  g skG+aFV
   mFLJ00324    24    LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLR---SPDGTSKGCAFV 67   

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F ++ +A++A++ l+G+++  g        
   mFLJ00324    68 KFGSQGEAQAAIQGLHGsRTMTGASSSL    95   

RRM_1: domain 2 of 2, from 265 to 336: score 80.0, E = 4.8e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  +++L + F +fG ++s+k++ D  r+t++sk f+FV
   mFLJ00324   265    LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD--RATNQSKCFGFV 309  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A+ A++a+nG+++g ++l+v   
   mFLJ00324   310 SFDNPTSAQTAIQAMNGFQIGMKRLKV    336  

//