hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01782/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00318  ( 471 res)   mpj01782

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOLI     hormone ligand-binding domain in nuclear rec   192.6    3.6e-53   1
ZnF_C4   C4 zinc finger in nuclear hormone receptors    149.3      4e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C4     1/1     141   212 ..     1    72 []   149.3    4e-40
HOLI       1/1     279   438 ..     1   158 []   192.6  3.6e-53

Alignments of top-scoring domains:
ZnF_C4: domain 1 of 1, from 141 to 212: score 149.3, E = 4e-40
                   *->sepCaVCgdpAsGyHfGvlsCrACkaFFRRtvvlkkkYkCkknnnCe
                       ++Ca+Cgd++sG+H+Gv sC++Ck+FF+Rtv+++++Y+C+ n++C 
   mFLJ00318   141    KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCL 187  

                   idkkgRnrCRaCRlkKClevGMnpe<-*
                   idk++RnrC++CR++KCl++GM++e   
   mFLJ00318   188 IDKRQRNRCQYCRYQKCLAMGMKRE    212  

HOLI: domain 1 of 1, from 279 to 438: score 192.6, E = 3.6e-53
                   *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr
                      + ++++l+++vewak++p+F+eL+l+Dq+iLL+++w ell+   ++r
   mFLJ00318   279    QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR 325  

                   sa.lkksdlllfpdgtyirpd....lf.pfldrildelv.plreLkltde
                   s+  k+ ++ll+ ++  +r++ ++ + + ++dr+l elv+++r+++++++
   mFLJ00318   326 SIaVKD-GILLATGLHVHRNSahsaGVgAIFDRVLTELVsKMRDMQMDKT 374  

                   EyalLkaillfnpagpglseegqeiveklqeklsnaLhdYylknypmpny
                   E+ +L ai+lfnp+ +gls+  +  ve+l+ek++  L  Y++++yp  ++
   mFLJ00318   375 ELGCLRAIVLFNPDSKGLSN--PAEVEALREKVYASLEAYCKHKYP--EQ 420  

                   psRfakLllllpslrkis<-*
                   p+RfakLll+lp+lr+i    
   mFLJ00318   421 PGRFAKLLLRLPALRSIG    438  

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