hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01782/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00318  ( 471 res)   mpj01782

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Hormone_recep Ligand-binding domain of nuclear hormon   246.4    3.9e-70   1
zf-C4         Zinc finger, C4 type (two domains)        190.2    3.3e-53   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
zf-C4           1/1     142   217 ..     1    77 []   190.2  3.3e-53
Hormone_recep   1/1     282   463 ..     1   200 []   246.4  3.9e-70

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 142 to 217: score 190.2, E = 3.3e-53
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      ++C++CGD++SG+HYGv++CEGCKGFF+R+++k l+ Y+C+ nkdC 
   mFLJ00318   142    HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLT-YTCRDNKDCL 187  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   IdKr+RnrCQyCR++KCL++GM++eaV+++   
   mFLJ00318   188 IDKRQRNRCQYCRYQKCLAMGMKREAVQEE    217  

Hormone_recep: domain 1 of 1, from 282 to 463: score 246.4, E = 3.9e-70
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsys
                      ++ql+++vewaK++P+F+eL+l+DQ+iLL+++w ell+ ++++rs++
   mFLJ00318   282    DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA 328  

                   lkkatasdtllfpdGtdipresl....gsselierifeflvklrvnilap
                    k+     ++l+++G+ ++r+s+++ ++  ++ + + e++ k+r      
   mFLJ00318   329 VKD-----GILLATGLHVHRNSAhsagVGAIFDRVLTELVSKMR------ 367  

                   lreLkldeeEyalLkAIvlfnPsdvpgLsesareiveklqekylsaLlqy
                      +++d +E+ +L+AIvlfnP d +gLs++a   ve+l+ek++ +L  y
   mFLJ00318   368 --DMQMDKTELGCLRAIVLFNP-DSKGLSNPA--EVEALREKVYASLEAY 412  

                   cllnypdtlssdgpsRFakLLlllpvlrsiskdllehlfflkqlfnvpkv
                   c+++yp     ++p+RFakLLl+lp+lrsi+ ++lehlff+k+++ ++ +
   mFLJ00318   413 CKHKYP-----EQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPI 456  

                   ppLlkei<-*
                   + +l+e+   
   mFLJ00318   457 DTFLMEM    463  

//