hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01644/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00316  ( 641 res)   mph01644

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GBP      Guanylate-binding protein, N-terminal domain   602.8     2e-177   1
GBP_C    Guanylate-binding protein, C-terminal domain   581.4   5.7e-171   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GBP        1/1      21   284 ..     1   289 []   602.8   2e-177
GBP_C      1/1     286   582 ..     1   305 []   581.4 5.7e-171

Alignments of top-scoring domains:
GBP: domain 1 of 1, from 21 to 284: score 602.8, E = 2e-177
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      +++l++N++A++iL    ++itqpVvVVaivGlyRtGKS+LmN+Lag
   mFLJ00316    21    NEELRVNSKAINIL----ERITQPVVVVAIVGLYRTGKSYLMNRLAG 63   

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                                   +n+GF+lg+Tv+seTkGIwmWcvp    hp+kp+
   mFLJ00316    64 ----------------QNHGFNLGTTVRSETKGIWMWCVP----HPSKPK 93   

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   +tLvLLDTeGlgDvek+d+knd+wIFALavLLSStfVYNsm+tIn+qaL+
   mFLJ00316    94 FTLVLLDTEGLGDVEKGDPKNDSWIFALAVLLSSTFVYNSMSTINHQALE 143  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   qLh+VTELTe+IRaks++++++v+ds+efvsfFPdf+WtvRDF+LeL+l+
   mFLJ00316   144 QLHYVTELTERIRAKSTSRSEEVDDSDEFVSFFPDFIWTVRDFVLELKLE 193  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   g+ it+deyLenaLkl++g++ ++q++N++RecIr+fFp+rkCFvfdrP+
   mFLJ00316   194 GRVITADEYLENALKLIPGMSIKAQKANLPRECIRHFFPRRKCFVFDRPT 243  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   ++k+ll ++ee++ed+Ld+ F+ q+++fcsyifs +sk ktl   
   mFLJ00316   244 KDKELLVHVEEMPEDQLDHSFQVQSKEFCSYIFS-NSKAKTL    284  

GBP_C: domain 1 of 1, from 286 to 582: score 581.4, E = 5.7e-171
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      +Gi V+G+rLatLV+tYv+AInSG+VPCle+avtTLAQ+ENs+AVqk
   mFLJ00316   286    EGIVVNGNRLATLVTTYVDAINSGDVPCLENAVTTLAQRENSIAVQK 332  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   A++hY+eqM+Qr++LPT+tlQeLL+vH +CEkEA+avFme+SFk  D++Q
   mFLJ00316   333 AADHYSEQMAQRMRLPTDTLQELLTVHTACEKEAIAVFMEHSFK--DENQ 380  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                   +Fq+ Lv+++e++kedF+r+Ne+aS s+Cqa+L+ Ls++L+e+i++G fs
   mFLJ00316   381 QFQKNLVVTIEEKKEDFLRQNEAASLSHCQAELDKLSESLRESISRGVFS 430  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   vpGGhrL+lea++++e++Y  vPrKGvkA  vL++fLq     s+  ++D
   mFLJ00316   431 VPGGHRLYLEARKKVEQDYERVPRKGVKANHVLQSFLQ-----SQISIED 475  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                   s++q+d+aLt+++ka+Eaer + kEaAEk+++llr+kQK+ +++mEa+E+
   mFLJ00316   476 SIMQSDKALTDGQKAMEAER-AQKEAAEKEQELLRQKQKELQQVMEAQER 524  

                   syqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeLleeGFknestll
                   sy+E+++qL ekmE erk +++Eq+  LEhklk q+ +l eGFk++ ++ 
   mFLJ00316   525 SYKENVAQLHEKMETERKNILREQEVKLEHKLKIQKDMLNEGFKRKCEAM 574  

                   ekeIselr<-*
                     eIs+l+   
   mFLJ00316   575 DLEISQLQ    582  

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