hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01156/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00307  ( 516 res)   mtg01156

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
C2             C2 domain                                 89.4    7.2e-23   1
RPH3A_effector Rabphilin-3A effector domain            -129.7       0.14   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
RPH3A_effector   1/1      43   318 ..     1   310 []  -129.7     0.14
C2               1/1     335   424 ..     1    88 []    89.4  7.2e-23

Alignments of top-scoring domains:
RPH3A_effector: domain 1 of 1, from 43 to 318: score -129.7, E = 0.14
                   *->MaDtvvsstqdkWvcPsDRPLqlalraqLqaGWSVht..GaqARSPT
                          +              P+    ra  q+   V++++G +  SP 
   mFLJ00307    43    ----EYD------------PVRKEGRATRQTQSPVKPerGWTPASPQ 73   

                   dkqrktesLtae.........EkEvIqkViarAEkleslEQqRIGrLVdR
                   d+     ++  e + ++ ++ E+ +I++V+ r     s E +R+ +L   
   mFLJ00307    74 DSGPLLSEMAHEvdlesfkelERDIILRVLYRDQTVQSTEEERVRKLKSH 123  

                   LEtMrknvaGnGVsr.....CLLCgeeLGlLgSkSYAvvCkDCrKkVCtk
                   L   r + a       +++ C  C   LGlL      +vC+ C   VC  
   mFLJ00307   124 LQYLRWKGAKSSSQEykekcCARCQRALGLLLNRG--AVCQGCSHRVCSE 171  

                   NCGVEtsdVNqttgkkepvwLCKICsEqREVLWKrSGAWFYKg.lPkfvL
                    C V               w C +C E R V   + G WF+ ++  kf  
   mFLJ00307   172 -CRVFLRR--------TRAWKCTVCFEDRNV-KIKTGEWFFEErARKF-- 209  

                   PlktPqrkd..........dplFrPlyvpaTeeqplpee..ssaartPar
                     +t +r  + + +  ++  +l +   vp+T + p +e++ ss +   a+
   mFLJ00307   210 --PTAGRREtagakllqsyQRLSKISVVPPTPP-PFSESqcSSSV-QKAS 255  

                   GRvvssDsDsDsDLsssdlEDRraPggakGpkltkapgdSSgsmetprWa
                                L +   ED + P      k +++p+   +s       
   mFLJ00307   256 T---------PDILKAFHQEDPKHPPDP-VLKQDTPPSSPTHSAV----F 291  

                   SpArmsstlldsegWdlGsetGAGdTsrlPnGetllRRetsv<-*
                   S +     l   ++           T     G      +  v   
   mFLJ00307   292 SGGLRHGSLISINS---------TCTE---MG---NFDNANV    318  

C2: domain 1 of 1, from 335 to 424: score 89.4, E = 7.2e-23
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      L++ ++ +knL+   +k++k++PYVk +l++d++ + k+kT+v k+t
   mFLJ00307   335    LEICIKTCKNLAYGEEKKRKCNPYVKTYLLPDRSSqGKRKTRVQKNT 381  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   l+P+++Et+ ++v+p +l  ++L+++V++ +++ r  flGev+   
   mFLJ00307   382 LDPTFEETLKYQVDPGQLMTrRLQVSVWHLGTLARRVFLGEVI    424  

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