hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mif/mif03013/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00306  ( 118 res)   mif03013

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     48.7    7.6e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/2       2    24 ..     1    23 []    26.6   0.0035
ZnF_C2H2   2/2      30    53 ..     1    23 []    28.6  0.00085

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 2, from 2 to 24: score 26.6, E = 0.0035
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgksf++  +L  Hm  H   
   mFLJ00306     2    FKCKV-CGKSFNRMyNLLGHMHLH    24   

ZnF_C2H2: domain 2 of 2, from 30 to 53: score 28.6, E = 0.00085
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kCp+ C+ +f+ k++L rHm+ +H   
   mFLJ00306    30    FKCPY-CSSKFNLKgNLSRHMKvKH    53   

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