hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mif/mif03013/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00306  ( 118 res)   mif03013

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          53.0    6.7e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/2       2    24 ..     1    24 []    31.8  1.6e-05
zf-C2H2    2/2      30    53 ..     1    24 []    28.3  0.00017

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 2, from 2 to 24: score 31.8, E = 1.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +CgksF+r +nL  H+  H   
   mFLJ00306     2    FKCK-VCGKSFNRMYNLLGHMHLH    24   

zf-C2H2: domain 2 of 2, from 30 to 53: score 28.3, E = 0.00017
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kCp +C  +F+ k+nL rH++++H   
   mFLJ00306    30    FKCP-YCSSKFNLKGNLSRHMKVkH    53   

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