hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mng/mng15233/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00304  ( 864 res)   mng15233

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       487.3   7.4e-142   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1     397   827 ..     1   499 []   487.3 7.4e-142

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 397 to 827: score 487.3, E = 7.4e-142
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                       kk++++k +++ L+W +l+           Ps+i++ tv+     +
   mFLJ00304   397    AKKPIQTKFRMPLLNWVALK-----------PSQITG-TVF-----T 426  

                   kldeekfLynnldldeleelFaakektkkakkrsvsekksklkkkkvqqn
                   +l++ek+  ++ld+ ++ee F  k+k++++   ++s++k k +++k+ ++
   mFLJ00304   427 ELNDEKV-LQELDMNDFEEHF--KTKSQGPCL-DISALKGK-ASQKAPTK 471  

                   lkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdlle
                   + ++ ++r++n  laI+lr+   +l      i++ai ++D ++ls+d+le
   mFLJ00304   472 TILIEANRAKN--LAITLRKG--NLGADR--ICQAIETYDLQTLSLDFLE 515  

                   qLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLipyl
                    L +f+P   t +e++++  ++++ ++++eeL+++++ F+l +s+ i++l
   mFLJ00304   516 LLTRFLP---TDYERSLIARFEKE-QRPMEELSEEDR-FMLRFSR-IQRL 559  

                   eeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliLai
                   +eR+n+l+f  nF+++ ++L+p+l++++aA++++++S+k+r++Le++La+
   mFLJ00304   560 PERMNTLTFLGNFPDTAQLLMPQLNAIIAASMSIKSSDKLRQILEIVLAF 609  

                   GNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirkky
                   GNyMN +s+r  G+A+GF+L+sL+ L+ +Ks+d+k+TLLH+lvk+i +ky
   mFLJ00304   610 GNYMN-SSKR--GAAYGFRLQSLDALLEMKSTDRKQTLLHYLVKVIAEKY 656  

                   pdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdpeg
                   p+l++F+sdlh++dka++v+l+ +  dv++l+r   +lEl+++++  +  
   mFLJ00304   657 PQLTGFHSDLHFLDKAGSVSLDSVLGDVRSLQR---GLELTQREFVRQ-- 701  

                   hpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkdrd
                   ++    + v+++Fl a +  ++kL +d ++ ++++e++vey+ge+pk+  
   mFLJ00304   702 DD----CLVLKEFLRANSPTMDKLLADSKTAQEAYESVVEYFGENPKT-- 745  

                   vspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrvke
                   +sp  FF+ f++F k++kka +e+     +++++E+ ++           
   mFLJ00304   746 TSPSMFFSLFSRFTKAYKKAEQEV-----EQWKKEAAAD-----T---SG 782  

                   tteyeqssskqkeneerrvernplmdfeverdflgvldsllkelrtdssf
                     e+   +s+ k        r+++md+++e+++++ +++l++e+++d ++
   mFLJ00304   783 REEPPTPKSPPKA-------RRQQMDLISELKRKQQKEPLIYESDRDGAI 825  

                   er<-*
                   e+   
   mFLJ00304   826 ED    827  

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