hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mng/mng15233/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00304  ( 864 res)   mng15233

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       480.9     1e-140   1
Drf_FH3  Diaphanous FH3 Domain                          234.4    1.6e-66   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Drf_FH3    1/1      53   262 ..     1   234 []   234.4  1.6e-66
FH2        1/1     398   763 ..     1   413 []   480.9   1e-140

Alignments of top-scoring domains:
Drf_FH3: domain 1 of 1, from 53 to 262: score 234.4, E = 1.6e-66
                   *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva
                      gGh+++l a++nfkevc+e++RF+ l++++++     ed +++++va
   mFLJ00304    53    GGHDIILAAFDNFKEVCGEQHRFEKLMEYFRH-----EDSNIDFMVA 94   

                   tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL
                   +mqFIN++v   +s+e+++fR+ L++Eft+lGLd yle+l++t  esdkL
   mFLJ00304    95 CMQFINIVV---HSVENMNFRVFLQYEFTHLGLDLYLERLRLT--ESDKL 139  

                   ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv
                   ++qI+++ +n++dv+ ll+ ++tk++vle++eel+e++ +l+e++++   
   mFLJ00304   140 QVQIQAYLDNVFDVGTLLEETETKNAVLEHMEELQEQVATLTERLRD--T 187  

                   eldslssvaellsnllkltgaedlllSilQhllllakdseeskLtsyikl
                   e+ds+ ++ael+++l+++ ++++ l           ++++ ++ t +   
   mFLJ00304   188 ENDSMAKIAELEKQLSQARKELETL-----------RERFSES-TPMGTS 225  

                   leeivqqIllhrtkpsdpkfeqklqenvdegterlld<-*
                    +    + +  +t+++++ +e+k  e++ +g++r+l    
   mFLJ00304   226 RRIPEPEKVPVPTVVRPSALELKVEELEEKGLIRILR    262  

FH2: domain 1 of 1, from 398 to 763: score 480.9, E = 1e-140
                   *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse
                      kk++++k++++ L+W++l+psq++gt v+++l++e+  +  +ld+ +
   mFLJ00304   398    KKPIQTKFRMPLLNWVALKPSQITGT-VFTELNDEKVLQ--ELDMND 441  

                   lEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLrkls
                   +Ee+F++k++++  + s +k ++s+k+++++ +++++r++N+aI+Lrk  
   mFLJ00304   442 FEEHFKTKSQGPCLDISALKGKASQKAPTKTILIEANRAKNLAITLRKG- 490  

                   klppeeivqAilemDedvLgvvlflkemldllenLlkmaPtkeElkklqe
                   +l ++ i+qAi   D  +L+        ld+le L +++Pt+ E+ ++  
   mFLJ00304   491 NLGADRICQAIETYDLQTLS--------LDFLELLTRFLPTDYERSLI-- 530  

                   keykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeevee
                   +++ ++++++++L++++ +F+l +s+ i rl eR+++l+F  +F+++ ++
   mFLJ00304   531 ARFEKEQRPMEELSEED-RFMLRFSR-IQRLPERMNTLTFLGNFPDTAQL 578  

                   lkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGFkL
                   l p+l++++aAs ++++S k++++Le++La+GNyMNs +r  G A+GF+L
   mFLJ00304   579 LMPQLNAIIAASMSIKSSDKLRQILEIVLAFGNYMNSSKR--GAAYGFRL 626  

                   ssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelldfs
                   +sL+ L+++Kst d+k+TLLH+lvk+i+e            k+p+l++f+
   mFLJ00304   627 QSLDALLEMKST-DRKQTLLHYLVKVIAE------------KYPQLTGFH 663  

                   seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeepsd
                   s+L++++kA  v+l+++  dv++L++gl+  ++e+  +            
   mFLJ00304   664 SDLHFLDKAGSVSLDSVLGDVRSLQRGLELTQREFVRQDD---------- 703  

                   kFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkdets
                     + v+keFl   +  +dkL ++ k+a+e++++++eYF   ge+pk +ts
   mFLJ00304   704 --CLVLKEFLRANSPTMDKLLADSKTAQEAYESVVEYF---GENPK-TTS 747  

                   peeFFkilrdFlnefk<-*
                   p  FF+ +++F +++k   
   mFLJ00304   748 PSMFFSLFSRFTKAYK    763  

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