hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mlk/mlk02300/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00296  ( 397 res)   mlk02300

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    31.4    0.00013   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3      71   116 ..     1    46 []     3.3  1.5e+02
WD40       2/3     289   330 ..     1    46 []    12.9      4.4
WD40       3/3     340   390 ..     1    46 []    15.8      1.6

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 71 to 116: score 3.3, E = 1.5e+02
                   *->t.kllrtlk.gHtge..spVtsvafspdggssdspnllasgs..Dgt
                         + r +k  H g ++ +V +++  pd       +ll++++ + + 
   mFLJ00296    71    GlHPERDFKvRHGGFsdRSVFDLKHVPDT------RLLVTSGlpGCY 111  

                   irlWd<-*
                   i +W    
   mFLJ00296   112 IQMWQ    116  

WD40: domain 2 of 3, from 289 to 330: score 12.9, E = 4.4
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++ ++ ++k+  +   + + v++ p       +n+la ++ Dgt+ +
   mFLJ00296   289    SsAQCPVFKpSPDP--ELLRVTWAPGL-----DNCLAISGfDGTVQI 328  

                   Wd<-*
                   +d   
   mFLJ00296   329 YD    330  

WD40: domain 3 of 3, from 340 to 390: score 15.8, E = 1.6
                   *->t.kllrtlkgHtge........spVtsvafspdggssdspnllasgs
                      + ++l+t kgH   ++++ ++   Vt+ +++p       p+ l+s+ 
   mFLJ00296   340    QaEPLFTHKGHIFLdgndvdsaPLVTTHTWHPRK-----PRTLLSAA 381  

                   .DgtirlWd<-*
                   +D+++++Wd   
   mFLJ00296   382 sDSSLHVWD    390  

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