hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mlk/mlk02300/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00296  ( 397 res)   mlk02300

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        22.1      0.013   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3     239   280 ..     1    38 []     0.8  1.6e+02
WD40       2/3     292   330 ..     1    38 []    10.8      9.4
WD40       3/3     342   390 ..     1    38 []    11.3      8.1

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 239 to 280: score 0.8, E = 1.6e+02
                   *->eclavl.gHtspVtcvafspd...sgpllasgSrDgtikiWd<-*
                      e ++  +g ++  +c  +   + ++gp++as ++Dg +++ d   
   mFLJ00296   239    ETVSPGsGSSGERWCAEVRNKgqgPGPCIASLGSDGQLCLLD    280  

WD40: domain 2 of 3, from 292 to 330: score 10.8, E = 9.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +c    +        v ++p   ++la ++ Dgt+ i+d   
   mFLJ00296   292    QCPVFKpSPDPELLRVTWAPGLDNCLAISGFDGTVQIYD    330  

WD40: domain 3 of 3, from 342 to 390: score 11.3, E = 8.1
                   *->eclavl.gHtspVtcvafspd...........sgpllasgSrDgtik
                      e+l +++gH  +    +++  +  ++ +  +  +++l+s+ +D +++
   mFLJ00296   342    EPLFTHkGH-IFLDGNDVDSAplvtthtwhprKPRTLLSAASDSSLH 387  

                   iWd<-*
                   +Wd   
   mFLJ00296   388 VWD    390  

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