hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh04332/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00293  ( 1022 res)   msh04332

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                        1138.7          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       7   712 ..     1   771 []  1138.7        0

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 7 to 712: score 1138.7, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +++ ++ g  D+vlL++L+++ ++ NL+ R++k+ IYTYiG vLv+v
   mFLJ00293     7    DEEGPEYGKPDFVLLDQLTMEDFMKNLELRFEKGRIYTYIGEVLVSV 53   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPY++l p+Y++e i+kY+      G++++E pPH++A+A++AY++M+r+
   mFLJ00293    54 NPYQEL-PLYGPEAIAKYQ------GRELYERPPHLYAVANAAYKAMKRR 96   

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.....svesvedqiLesN
                   +++ +I+ISGESGAGKTEa+K+imqY+Aav++++++ +ve+v++++L+s+
   mFLJ00293    97 SRDTCIVISGESGAGKTEASKHIMQYIAAVTNpsqraEVERVKNVLLKST 146  

                   PiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVV
                   ++LEAFGNA T RN NSSRFGK+++I+Fd+kG++vG++I  YLLEKSRV 
   mFLJ00293   147 CVLEAFGNARTNRNHNSSRFGKYMDINFDFKGDPVGGHIHSYLLEKSRVL 196  

                   sQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfa
                   +Q  gERN+H FYQLL+G  +++++ l+L++   +p  Y++++qg+    
   mFLJ00293   197 KQHVGERNFHAFYQLLRGSEDQELQGLHLER---NPAVYNFTRQGA---- 239  

                   nkryssgcltvdgiDDaeeFkeTdEv.tlkAmrvlGfseeEqesIFrilA
                        + +  v    D++e  +   +++  Amr++Gfs +E+esI rilA
   mFLJ00293   240 -----GLNMGVHNALDSDEKSH---QgVMEAMRIIGFSPDEVESIHRILA 281  

                   AILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLeka
                   AILHLGNieF e+++  ++ + + l vade  + ++A+L   + +  ++ 
   mFLJ00293   282 AILHLGNIEFVETEE--NGPQKGGLEVADEALVGYVAKLTATPRDLVLRT 329  

                   LtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINk
                   L+ R++  gg   +vi k ++v +A+yaRDA AKa+Y RLF W+V++IN+
   mFLJ00293   330 LLARTVASGGR--EVIEKSHTVAEASYARDACAKAMYQRLFEWVVNKINS 377  

                   sl...........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfF
                    +++++++++ ++++++IGVLDIyGFE+F +NSFEQfCINy+NEKLQQ+F
   mFLJ00293   378 IMeprnrdprcdgKDTVIGVLDIYGFEVFPVNSFEQFCINYCNEKLQQLF 427  

                   nqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslL
                   +q+++K+EQEEYerEGI W  I++f  +N  +++L+E++     GIl+ L
   mFLJ00293   428 IQLILKQEQEEYEREGIAWQTIEYF--NNATIVELVEQP---RRGILAVL 472  

                   DEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.
                   DE+C +   +  TD  Fl+ L     ++hh  hph+s+     ++ +  +
   mFLJ00293   473 DEACST--AGPITDRIFLQTL-----DTHHRHHPHYSS-----RQlCPTd 510  

                   kkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknplia
                   k+ +  ++F ikHYAGdVtY+veGF++KN+D Lf+d++ Ll +S +p ++
   mFLJ00293   511 KTMEFGRDFQIKHYAGDVTYSVEGFIDKNRDSLFQDFKRLLYNSVDPTLR 560  

                   sLFpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsq
                    ++p++  + ++                           ++krp T+G++
   mFLJ00293   561 AMWPDGQQDITE---------------------------VTKRPLTAGTL 583  

                   Fk.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLE
                   Fk+s+  L+e+L+s++P+++RCIKPNe K +g  d+  ++hQ+ ylG+LE
   mFLJ00293   584 FKnSMVALVENLASKEPFYVRCIKPNEDKVAGRLDEAHCRHQVEYLGLLE 633  

                   niRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkace
                   n+R+RraGF++R+p+ +Fl RYk+ + +twp+        l g++++a+ 
   mFLJ00293   634 NVRVRRAGFASRQPYPRFLLRYKMTCEYTWPNH-------LLGSDRDAVS 676  

                   alLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   alL+++g         ++++++G++K+F+R+p++l  LE+ R +   
   mFLJ00293   677 ALLEQHG--------LQGDVAFGHSKLFIRSPRTLVTLEQSRAR    712  

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