hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh04332/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00293  ( 1022 res)   msh04332

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Myosin_head   Myosin head (motor domain)                897.0   5.8e-266   1
Myosin_tail_2 Myosin tail                               269.0    6.4e-77   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Myosin_head     1/1      15   698 ..     1   795 []   897.0 5.8e-266
Myosin_tail_2   1/1     818  1021 ..     1   242 []   269.0  6.4e-77

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 15 to 698: score 897.0, E = 5.8e-266
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                       +D+v+L +l+ + +  NL+ R+  ++ IYTY+G vLvsvNPY++lp
   mFLJ00293    15    KPDFVLLDQLTMEDFMKNLELRFE-KGRIYTYIGEVLVSVNPYQELP 60   

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                   +Y++e iakY G+  +E pPH++A+A++AY++M+++ ++ +I+isGESGA
   mFLJ00293    61 LYGPEAIAKYQGRELYERPPHLYAVANAAYKAMKRRSRDTCIVISGESGA 110  

                   GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA
                   GKTE++K++mqY+A+v+  ++          +e ++++ ++L s  +LEA
   mFLJ00293   111 GKTEASKHIMQYIAAVTNPSQ---------RAEVERVKNVLLKSTCVLEA 151  

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                   FGNA T RN NSSRFGK++ I+Fd +G++    vGg+I  YLLEKSRV +
   mFLJ00293   152 FGNARTNRNHNSSRFGKYMDINFDFKGDP----VGGHIHSYLLEKSRVLK 197  

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                   Q  gERNFH FYQLL g  +qe ++ L+L++  +p  Y++++q++     
   mFLJ00293   198 QHVGERNFHAFYQLLRGSEDQE-LQGLHLER--NPAVYNFTRQGA----G 240  

                   ytvyrrDdgi.....DDaeeFkdtrkAlkiiGftdeeqrsifrilAAILh
                   +       g+++  + D +  + + +A++iiGf+  e +si rilAAILh
   mFLJ00293   241 LNM-----GVhnaldSDEKSHQGVMEAMRIIGFSPDEVESIHRILAAILH 285  

                   LGNieGFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaL
                   LGNie F+++ +   ++ q G  ++ d++  +  +a L  +     ++ L
   mFLJ00293   286 LGNIE-FVET-EE--NGPQKGGLEVADEAL-VGYVAKLTATPRDLVLRTL 330  

                   lsrri.ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVeki
                   l r++ + G     re++ k  +v +A+yaRDA AKa Y RLF W+V+ki
   mFLJ00293   331 LARTVaSGG-----REVIEKSHTVAEASYARDACAKAMYQRLFEWVVNKI 375  

                   NkaLsakeQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIy
                   N  ++      +                     ++  d +  +IGvLDIy
   mFLJ00293   376 NSIMEPRN---R---------------------DPRCDGKDTVIGVLDIY 401  

                   GFEIFaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfId
                   GFE+F  +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W  I+
   mFLJ00293   402 GFEVF-PVNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGIAWQTIE 450  

                   yglDnqacidLIEkKmkPpGIlslLDEeCrfPka.tDqtFldKLlqtfss
                   y ++n ++++L+E   +  GIl+ LDE+C +  + tD  Fl+ L  ++  
   mFLJ00293   451 Y-FNNATIVELVEQ--PRRGILAVLDEACSTAGPiTDRIFLQTLDTHH-R 496  

                   khprlthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDp
                   +hp   h+ ++    +  k+  +   F ikHYAGdV+Y++egf++KN+D 
   mFLJ00293   497 HHP---HY-SSRQLCPTDKTMEFGRDFQIKHYAGDVTYSVEGFIDKNRDS 542  

                   LfddlisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaa
                   Lf+d   ll  S d p+l+ ++p+                          
   mFLJ00293   543 LFQDFKRLLYNSVD-PTLRAMWPD-------------------------- 565  

                   aksaklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvR
                          ++     ++k++  T+g +fk+s+ +L+++L s    +P +vR
   mFLJ00293   566 -------GQQDITEVTKRP-LTAGTLFKNSMVALVENLASK---EPFYVR 604  

                   CIKPNekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlq
                   CIKPNe K ag +D+  ++hQ+ +lG+LE ++R+rraGF++R+++++Fl 
   mFLJ00293   605 CIKPNEDKVAGRLDEAHCRHQVEYLGLLE-NVRVRRAGFASRQPYPRFLL 653  

                   RYrlLapktwpsgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkT
                   RY++ ++ twp      + g++++++ ++L+++     +l  ++++fG++
   mFLJ00293   654 RYKMTCEYTWPNH----LLGSDRDAVSALLEQH-----GL-QGDVAFGHS 693  

                   KiFfR<-*
                   K F+R   
   mFLJ00293   694 KLFIR    698  

Myosin_tail_2: domain 1 of 1, from 818 to 1021: score 269.0, E = 6.4e-77
                   *->lKvqAseifkGKKerrrqSvlsvRkFrGDYLgleeInpklqdalasq
                      +Kv+A+ +++G +++++++    R++  DYL+ +  ++++ ++l+++
   mFLJ00293   818    AKVAAMGALQGLRQDWGCQ----RAWARDYLSSDT-DNPTASHLFAE 859  

                   egqiideLr.kd.FgkVlFadkgevLVvKfnRsLsgKpspRiLlLTdkal
                   +    ++Lr+kd+Fg+VlF+++    V+K+nR  + K+++R+LlLTd++l
   mFLJ00293   860 QL---KALReKDgFGSVLFSSH----VRKVNR--FRKSRDRALLLTDRYL 900  

                   YlvdrkkkKkgpEKdqktyqlKrripLseItsiSlSplsDdlfViHvked
                   Y+++          ++++y ++r +pL ++t++S+++++D+l+V+H    
   mFLJ00293   901 YKLE----------PGRQYRVMRAVPLEAVTGLSVTSGRDQLVVLHA--- 937  

                   lakgkgDlvlesdhkqPkkeeRiTElvtvLvktyksatggneLnvnqfsd
                     +g+ Dlv+++++ qP++++Ri+Elv++L ++++++++  +L+v+ +sd
   mFLJ00293   938 --QGYDDLVVCLHRSQPPLDNRIGELVGMLAAHCQGEGR--TLEVR-VSD 982  

                   sieynlkkekfgpGkkktvkfqkdatsgvellifkkkkghlvsiapq<-*
                   +i  ++++        +++++++++++ +++++f+++++++++ +p    
   mFLJ00293   983 CIPLSQRG--------ARRLISVEPRPEQPEPDFQSSRSTFTLLWPS    1021 

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