hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msp/msp02004/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00292  ( 166 res)   msp02004

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FHA      FHA domain                                      54.3    2.7e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FHA        1/1      55   127 ..     1    94 []    54.3  2.7e-12

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 55 to 127: score 54.3, E = 2.7e-12
                   *->vtiGRdsdsddilldddqdislsgsiSrrHatieykdggvslelafr
                       ++GR+++ +  l  ++        +Sr+H+++e   +++s+ laf 
   mFLJ00292    55    LLVGRGQNTHLQLQLPQ--------LSRYHLSLEPYLEKGSSLLAF- 92   

                   laqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
                            +l+ l  k+  + ++vNg +l+++e+v+L   ++i+++   
   mFLJ00292    93 ---------CLKVLTRKS--C-VWVNGLPLRYLEQVPLGTINRISFS    127  

//