hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie30090/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00289  ( 555 res)   mie30090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Tryp_SPc Trypsin-like serine protease                   267.4    1.1e-75   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Tryp_SPc   1/2      41   271 ..     1   226 []   164.6  9.7e-45
Tryp_SPc   2/2     303   523 ..     1   226 []   110.2  2.3e-28

Alignments of top-scoring domains:
Tryp_SPc: domain 1 of 2, from 41 to 271: score 164.6, E = 9.7e-45
                   *->RIVGGseakigsfPWqvsLq......CGGSLIsprwVLTAAHC....
                         G   + +g++PWq+s+++++ + C GSL+++ wVLTAAHC  + 
   mFLJ00289    41    PQEG--NTLPGEWPWQASVRrqgvhiCSGSLVADTWVLTAAHCfekm 85   

                   ........rVrlGshdlssgeeteggprldspggqvikVskiievHpnYn
                    +   ++  V+lGs+ +             spg++ ++V+        Yn
   mFLJ00289    86 ataelsswSVVLGSLKQEGQ----------SPGAEEVGVAALQ-LPKAYN 124  

                   .....NDIALLkLkepvtlsdsntvrPicLPssneiktsegntvpaGttc
                   + +++ D+ALL+L+ p    +     ++cLP++        +++p G+ c
   mFLJ00289   125 hysqgSDLALLQLTHP----T--VQTTLCLPQP-------TYHFPFGASC 161  

                   tVsGWGrtsegpeesgggslpdvLqevnvpivsnetCr............
                   +++GW   ++          +++L+  ++ ++s+ tC+  +++ +++  +
   mFLJ00289   162 WATGWDQNTS--------DVSRTLRNLRLRLISRPTCNclynrlhqrlls 203  

                   ......MlCAGyleggntpgGkDaCqGDSGGPLvc.......vLvGiVSW
                   ++ +++MlC G +      g +++CqGDSGGP +c+++++++v+vGi+S+
   mFLJ00289   204 nparpgMLCGGAQP-----GEQGPCQGDSGGPVMCrepdghwVQVGIISF 248  

                   GssslygCarpnkPGVYTrVssyldWI<-*
                    s     Ca+ + P   T+ + + +W    
   mFLJ00289   249 TS----KCAQEDTPVLLTDMAVHSSWL    271  

Tryp_SPc: domain 2 of 2, from 303 to 523: score 110.2, E = 2.3e-28
                   *->RIVGGseakigsfPWqvsLq......CGGSLIsprwVLTAAHC....
                      R  G +  +  ++PW + L ++++  CGG+L+s+  VLTAAHC  ++
   mFLJ00289   303    RSAGPQAGALSQWPWDARLKhhgklaCGGALVSEVVVLTAAHCfigr 349  

                   ......rVrlGshdlssgeeteggprldspggqvikVskiievHpnYn..
                   ++     V lG+                    +  + ++ i  H  Y ++
   mFLJ00289   350 qtleewSVGLGAGP------------------EEWGLKQLI-LHGAYThp 380  

                   ...NDIALLkLkepvtlsdsntvrPicLPssneiktsegntvpaGttctV
                   ++++D+A L L++pvtl++    rP+cLP         + ++p+G  ++V
   mFLJ00289   381 eggYDVAFLLLAQPVTLGP--GLRPLCLPYA-------DHHLPDGEHGWV 421  

                   sGWGrtsegpeesgggslpdvLqevnvpivsnetCr..............
                    G  +t+      +g  +p++   v v+++    C++++  +++++ +  
   mFLJ00289   422 LG--LTQK-----AGINYPQT---VPVTVLGPMACSrqhaapggtgipil 461  

                   ..MlCAGyleggntpgGkDaCqGDSGGPLvc......vLvGiVSWGsssl
                   ++M+C+         g    C+G SG PLv++ +++++LvG+ S+G    
   mFLJ00289   462 pgMVCTTVV------GEPPHCEGLSGAPLVHeirgtwFLVGLHSFG---- 501  

                   ygCarpnkPGVYTrVssyldWI<-*
                   + C +  kP+V++  s+y dWI   
   mFLJ00289   502 DTCQSSAKPAVFAALSAYEDWI    523  

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