hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mie/mie30090/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00289  ( 555 res)   mie30090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Trypsin  Trypsin                                        255.2    8.7e-73   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Trypsin    1/2      40   271 ..     1   258 []   148.5  1.2e-40
Trypsin    2/2     304   523 ..     1   258 []   113.2  4.8e-30

Alignments of top-scoring domains:
Trypsin: domain 1 of 2, from 40 to 271: score 148.5, E = 1.2e-40
                   *->IvGGeeaqpgsftsPwqvslqvrsgggsfkhfCGGsLisenwVLTAA
                           ++ pg++  Pwq+s+ + +      h+C GsL+++ wVLTAA
   mFLJ00289    40    EPQEGNTLPGEW--PWQASVRRQG-----VHICSGSLVADTWVLTAA 79   

                   HCvsgsesapassvqVslslrlGahnlslsegg..eqkfdvakyiivHpn
                   HC+   + a  ss+ V    +lG+  l++   +++  ++ va      + 
   mFLJ00289    80 HCFEKMATAELSSWSV----VLGS--LKQEGQSpgAEEVGVAA-LQLPKA 122  

                   ynpdtldgeYdnDiALlkLsspgvtlsdtvrpicLpattasddlpvGttc
                   yn   ++     D+ALl+L  p    +  + ++cLp+  +   +p G++c
   mFLJ00289   123 YNHYSQG----SDLALLQLTHP----TVQT-TLCLPQ--PTYHFPFGASC 161  

                   tvsGWGrrptk.nglpdvLqevnvpvvsretCrsaylyggk........d
                   +++GW  + t++     +L+ + ++++sr tC++    +++ +++  +++
   mFLJ00289   162 WATGWDQN-TSdVS--RTLRNLRLRLISRPTCNC---LYNRlhqrllsnP 205  

                   DKIefvtdnmlCagal.ggkdaCqGDSGGPLvcsgggrgrwelvGivSwG
                          ++mlC ga +g +++CqGDSGGP++c+  + g w +vGi+S+ 
   mFLJ00289   206 -----ARPGMLCGGAQpGEQGPCQGDSGGPVMCREPD-GHWVQVGIISFT 249  

                   sygCargnkPGvytrVssyldWI<-*
                     +Ca+  +P   t  +   +W+   
   mFLJ00289   250 -SKCAQEDTPVLLTDMAVHSSWL    271  

Trypsin: domain 2 of 2, from 304 to 523: score 113.2, E = 4.8e-30
                   *->IvGGeeaqpgsftsPwqvslqvrsgggsfkhfCGGsLisenwVLTAA
                        G +  +  ++  Pw + l   +     k++CGG+L+se  VLTAA
   mFLJ00289   304    SAGPQAGALSQW--PWDARLKHHG-----KLACGGALVSEVVVLTAA 343  

                   HCvsgsesapassvqVslslrlGahnlslseggeqkfdvakyiivHpnyn
                   HC+ g  + + + + V     lGa      e +      ++  i H  y+
   mFLJ00289   344 HCFIG--RQTLEEWSV----GLGA----GPEEW----GLKQ-LILHGAYT 378  

                   pdtldgeYdnDiALlkLsspgvtlsdtvrpicLpattasddlpvGttctv
                    ++ +    +D+A l L++p vtl++  rp+cLp   a+  lp+G +++v
   mFLJ00289   379 HPEGG----YDVAFLLLAQP-VTLGPGLRPLCLPY--ADHHLPDGEHGWV 421  

                   sGWGrrptk.nglpdvLqevnvpvvsretCrsaylyggk...dDKIefvt
                    G +     + +     q+v v+v+++  C++++  +g ++ +     + 
   mFLJ00289   422 LGLTQ--KAgIN---YPQTVPVTVLGPMACSRQHAAPGGtgiP-----IL 461  

                   dnmlCagalggkdaCqGDSGGPLvcsgggrgrwelvGivSwGsygCargn
                   ++m+C+   g    C G SG PLv++    g+w+lvG +S+G + C +  
   mFLJ00289   462 PGMVCTTVVGEPPHCEGLSGAPLVHEIR--GTWFLVGLHSFG-DTCQSSA 508  

                   kPGvytrVssyldWI<-*
                   kP+v++  s y dWI   
   mFLJ00289   509 KPAVFAALSAYEDWI    523  

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