hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic33003/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00288  ( 329 res)   mic33003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable    75.8    5.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1       1   154 [.     1   310 []    75.8  5.3e-18

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 1 to 154: score 75.8, E = 5.3e-18
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                                                                     
   mFLJ00288     -    ----------------------------------------------- -    

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                                                                     
   mFLJ00288     - -------------------------------------------------- -    

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                              p +s                      q+ L+rvLkaY l
   mFLJ00288     1 -----------PLHS----------------------QQDLFRVLKAYTL 17   

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   y+pe   gYcQ  + +aa+LL++m   + e+AFwc+v+++e ylp ++  
   mFLJ00288    18 YRPE--EGYCQAQAPIAAVLLMHM---PAEQAFWCLVQVCEKYLPGYY-- 60   

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                         +  l  +q+d   l+sll++  P  +kHL++q            
   mFLJ00288    61 ------SEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQ------------ 92   

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                    idp+ly  +Wf++ Far+lP+  vlR+wD++f+e    g +++f+++l 
   mFLJ00288    93 KIDPLLYMTEWFMCAFARTLPWSSVLRVWDMFFCE----GVKIIFRVGLV 138  

                   iLklne...dkllkld<-*
                   +Lk+  ++++kl+ +    
   mFLJ00288   139 LLKHALgspEKLKACQ    154  

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