hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic33003/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00288  ( 329 res)   mic33003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                      24.6    1.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1       1   153 [.     1   219 []    24.6  1.4e-08

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 1 to 153: score 24.6, E = 1.4e-08
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                                           +l+                  sq   
   mFLJ00288     1    ---------------------PLH------------------SQ--- 5    

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                                            + L rvL AY   +P+ gYcQ+   
   mFLJ00288     6 -------------------------QDLFRVLKAYTLYRPEEGYCQAQAP 30   

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   +aA +L+ +   eqAF++L +++e ++P+ Yy+  l    lD  +L s +
   mFLJ00288    31 IAAVLLMHM-PAEQAFWCLVQVCEKYLPG-YYSEKLEAIQLDGEILFSLL 78   

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                       p+   +L    +d   +   wf   +a tlP +  lr++D++F++G
   mFLJ00288    79 QKVSPVAHKHLSRQKIDPLLYMTEWFMCAFARTLPWSSVLRVWDMFFCEG 128  

                   ivllfrvaLAvLkilk...eqiLda<-*
                     + frv L  Lk   +++e + ++   
   mFLJ00288   129 VKIIFRVGLVLLKHALgspEKLKAC    153  

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