hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj26301/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00285 ( 838 res) mfj26301 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PKD Repeats in polycystic kidney disease 1 (PKD1 484.0 7e-141 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PKD 1/9 43 147 .. 1 91 [] 56.3 4e-12 PKD 2/9 150 233 .. 1 91 [] 66.3 4e-15 PKD 3/9 236 316 .. 1 91 [] 73.9 2e-17 PKD 4/9 318 401 .. 1 91 [] 53.4 3e-11 PKD 5/9 402 487 .. 1 91 [] 47.9 1.3e-09 PKD 6/9 492 569 .. 1 91 [] 69.8 3.5e-16 PKD 7/9 572 653 .. 1 91 [] 70.7 1.8e-16 PKD 8/9 659 742 .. 1 91 [] 16.1 0.35 PKD 9/9 744 826 .. 1 91 [] 66.9 2.6e-15 Alignments of top-scoring domains: PKD: domain 1 of 9, from 43 to 147: score 56.3, E = 4e-12 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs. ++ ++a ptv++ ++ + +t+ + ++ v+++W+FGDG++ mFLJ00285 43 GLWVSAVPTVLP----PNATLALTGGV-LVDSAVEVAFLWNFGDGEq 84 ....................atsstgptvtHtYtkpGtYtVtLtvtnavG ++ +++ +++ + ++++ a+++ +++ tH+Yt+pG+Y++t+ v+n + mFLJ00285 85 vlrqfkppydesfqvpdptvAQVLVEHNTTHIYTTPGEYNLTVLVSNTY- 133 nssssatktvvVvvp<-* ++ ++++tv V mFLJ00285 134 -ENLTQQVTVSVRTV 147 PKD: domain 2 of 9, from 150 to 233: score 66.3, E = 4e-15 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs. ++ + s+ v+v ag+++tF+ ++ + v ytWdFGDGs+ mFLJ00285 150 NVAIGMSSNVLV----AGQPITFSPYP--LPSTDGVLYTWDFGDGSp 190 atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* ++ ++p +HtY+ +GtY +tL v+n v ss++a++ ++V+ + mFLJ00285 191 VLIQSQPVLNHTYSMTGTYRITLEVNNTV--SSVTAHADIRVFQE 233 PKD: domain 3 of 9, from 236 to 316: score 73.9, E = 2e-17 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa +++++ sp+v + g + +++as+ e+G+++++t+d+GDG mFLJ00285 236 GLTVYLSPSVEQ-----GAPMVVSASV---ESGDNITWTFDMGDG-- 272 tsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* t+ tg+++tv H+Y+++ ++tVt+ + n +G s++ v+V+v+ mFLJ00285 273 TVFTGpeATVQHVYLRAQNFTVTVEAANPAG--HLSQSLHVQVFVL 316 PKD: domain 4 of 9, from 318 to 401: score 53.4, E = 3e-11 *->vadftasptvgvksiAagesVtFtassStdedGsivsytW..dFGDG v+++++s + ++ + s+++ a++ +G++v y+++ +FGDG mFLJ00285 318 VLRIEPSTCIPT-----QPSAQLMAHV----TGDPVHYLFdwTFGDG 355 s.atsstg.ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<- s++ + +g+p+vtH +t++G +++ L+++ +v ++++ ++++V ++ mFLJ00285 356 SsNVTVHGhPSVTHNFTRSGIFPLALVLSSHV--NKAHYFTSICVEPE 401 * mFLJ00285 - - PKD: domain 5 of 9, from 402 to 487: score 47.9, E = 1.3e-09 *->vadftasptvgvksiAagesVtFtass...StdedGsivsytWdFGD ++t +p+ + V++ ++++ ++++++++ ytWdFG mFLJ00285 402 IRNITLQPER--------QFVKLGDEArlvAYSWPPFPYRYTWDFGT 440 Gsatsstg...ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp t++t++++ v ++Y++pG+Y V +tv+n++ ss ++++ v+V++p mFLJ00285 441 E-DTTHTQtggSEVKFIYREPGSYLVIVTVSNNI--SSTNDSAFVEVQEP 487 <-* mFLJ00285 - - PKD: domain 6 of 9, from 492 to 569: score 69.8, E = 3.5e-16 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa + +++ s+ + +++ +++a + +Gs+++y+W +GDG mFLJ00285 492 GIRINGSHVLEL-----QQPYLLSAMG----SGSPATYLWELGDG-- 527 tsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* + s+gp vtH+Y+++G++tV++ +n+v s s a+ +++V+ mFLJ00285 528 SQSEGPEVTHIYSSTGDFTVRVSGWNEV--SRSEAQLNITVKQR 569 PKD: domain 7 of 9, from 572 to 653: score 70.7, E = 1.8e-16 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa +++++as tv++ ++ sV+F+ e Gs+v y+W ++D + mFLJ00285 572 GLTINASRTVVP----LNGSVSFSTLL---EVGSDVHYSWVLCDR-C 610 tsstg.ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* t++ g+pt+++t++++Gt+++ +t+ n+vG s+ +++ ++V mFLJ00285 611 TPIPGgPTISYTFRSVGTFNIIVTAENEVG--SAQDSIFIYVLQF 653 PKD: domain 8 of 9, from 659 to 742: score 16.1, E = 0.35 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs. va + ++ +++ +++a++ dG+++sy+W+ ++ mFLJ00285 659 VAGGDNGCCFPT-----NYTLQLQAAV---RDGTNISYSWTAQQEGs 697 ..atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* +++ +g+ +++t +k+ tY V+L++tn G s+ a t+ v+p mFLJ00285 698 liTLFGSGKCFSLTALKASTYYVHLRATNMLG--SAAANRTIDFVEP 742 PKD: domain 9 of 9, from 744 to 826: score 66.9, E = 2.6e-15 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa +++ ++++++ +A+++s t++a+ + Gs v ytW++ G mFLJ00285 744 ESLILSASPNP---AAVNMSLTLCAEL---AGGSGVVYTWYLEEG-- 782 tsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-* +s+ + p+ tHt+ +pG + V++t+ n G s++at++v ++vp mFLJ00285 783 LSWKTsmPSTTHTFATPGLHLVRVTAENQLG--SVNATVEVAIQVP 826 //