hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid24030/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00283  ( 625 res)   mid24030

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     42.1    1.3e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/3     247   284 ..     1    36 []     0.6    2e+02
HEAT       2/3     298   334 ..     1    36 []    27.7  0.00027
HEAT       3/3     347   379 ..     1    36 []    14.0      2.7

Alignments of top-scoring domains:
HEAT: domain 1 of 3, from 247 to 284: score 0.6, E = 2e+02
                   *->e.lldellplllkllnDp..dpeVReaAaeaLgalaevl<-*
                      e +l e++ +llk l++p+++p+V + A++a  + +++    
   mFLJ00283   247    ElVL-EVFAVLLKTLESPesSPMVLKKAFQATLRWLQNP    284  

HEAT: domain 2 of 3, from 298 to 334: score 27.7, E = 0.00027
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        +l el+p+l+k l++p +eVR++A+e L +l+++    
   mFLJ00283   298    LlFLGELFPILQKRLCSPCWEVRDSALEFLTHLIRHW    334  

HEAT: domain 3 of 3, from 347 to 379: score 14.0, E = 2.7
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++      l l+ll+Dp++ VR++A+ a g+l+++    
   mFLJ00283   347    SeVP----TLALQLLQDPESYVRASAVGAAGQLSSQG    379  

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