hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01084/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00279  ( 1335 res)   mpg01084

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IQ       Short calmodulin-binding motif containing co    26.5     0.0038   1
MYSc     Myosin. Large ATPases.                        -462.4    5.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       2   152 ..     1   771 []  -462.4  5.4e-06
IQ         1/1     153   175 ..     1    23 []    26.5   0.0038

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 2 to 152: score -462.4, E = 5.4e-06
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      + ++ +                                         
   mFLJ00279     2    MSETAL----------------------------------------- 7    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                            +             g+         
   mFLJ00279     8 -------------------------P-------------GA--------- 10   

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                                 Fk                                  
   mFLJ00279    11 --------------FKT--------------------------------- 13   

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINkslsayf
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   IGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEYerEGI
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   eWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkgTDqtF
                                                         +           
   mFLJ00279    14 --------------------------------------R----------- 14   

                   leKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHYAGdVt
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   YnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaakekss
                                                                     
   mFLJ00279     - -------------------------------------------------- -    

                   ggagksrkagrrepskgtisskkrppTvGsqFk.sLneLmetLnstnPHF
                                        k++++TvG+++k++L++Lm+tL++tnP+F
   mFLJ00279    15 ---------------------KGMFRTVGQLYKeQLAKLMATLRNTNPNF 43   

                   IRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlpfdeFl
                   +RCI+PN+eKk+g+ d++lVl+QLr++GvLE+iRI+r GFP+R  f+eF+
   mFLJ00279    44 VRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRVVFQEFR 93   

                   qRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdnldeee
                   qRY+ +l ++  p+g       f+d k+ac++++++l+       ld++ 
   mFLJ00279    94 QRYE-ILTPNSIPKG-------FMDGKQACVLMIKALE-------LDSNL 128  

                   yqiGkTKvFlRnpgqlaeLEelRee<-*
                   y+iG +KvF+R +g+la+LEe+R+    
   mFLJ00279   129 YRIGQSKVFFR-AGVLAHLEEERDL    152  

IQ: domain 1 of 1, from 153 to 175: score 26.5, E = 0.0038
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++  +i +Qa++RGylaRk +    
   mFLJ00279   153    KITDVIIGFQACCRGYLARKAFA    175  

//