hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpg/mpg01084/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00279 ( 1335 res) mpg01084 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Myosin_tail_1 Myosin tail 786.1 1.4e-232 1 IQ IQ calmodulin-binding motif 25.1 0.0016 1 Filament Intermediate filament protein -166.1 0.06 1 Tektin Tektin family -192.2 0.2 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IQ 1/1 155 175 .. 1 21 [] 25.1 0.0016 Tektin 1/1 195 542 .. 1 393 [] -192.2 0.2 Filament 1/1 367 697 .. 1 359 [] -166.1 0.06 Myosin_tail_1 1/1 441 1298 .. 1 863 [] 786.1 1.4e-232 Alignments of top-scoring domains: IQ: domain 1 of 1, from 155 to 175: score 25.1, E = 0.0016 *->rraaikIQaawRGylaRkryk<-* ++ +i +Qa++RGylaRk++ mFLJ00279 155 TDVIIGFQACCRGYLARKAFA 175 Tektin: domain 1 of 1, from 195 to 542: score -192.2, E = 0.2 *->WhtsnkiqyriaeaqrddaerivheSrrlvnEtnattkksQrdvtkk + +n + r + + + i+he +l +E++ t ++ +k+ mFLJ00279 195 LRLRNWQWWRLFTKVKPLLNSIRHEDELLAKEAELTKVR-----EKH 236 LeqRiddinfWkdeLdreLedlkeEiddLltyKtrlenaLealkePlsIa L+ ++ L++++ + L ++K l+ L+a e + a mFLJ00279 237 LAA------------ENRLTEMETMQSQLMAEKLQLQEQLQAETELCAEA 274 keCLtlR..egRigiGDlVrD...eVeeELlKEleVIegvmkLLqetleq +e L R +++++ ++++D + +VeeE + + + +k +q +++ mFLJ00279 275 EE-LRARltAKKQELEEICHDleaRVEEEEER-CQYLQAEKKKMQQNIQE 322 aeeQlrllrsaRynLekDlrdKfeAleIDekclaLnnnGSptIsykpdvt eeQl++ +saR++L + K+++ + k +L ++ I+ + mFLJ00279 323 LEEQLEEEESARQKLQLE---KVTTEA---KLKKLEED---QIIMEDQNC 363 RipknstspeqRmSEYSEWeeFsneNlerAekervnSqaLReaidsilkq ++ k+ +e+R+ +eF+ + e+ ek ++ ++L+++ +++ mFLJ00279 364 KLAKEKKLLEDRV------AEFTTNLMEEEEKS-KSLAKLKNKHEAMITD 406 tanDLrtQadaveeafrkRIrEtqeakdeLenqlkktmeeIakveknIre + Lr++ +k E + ++ +Le + + ++Ia+++ I e mFLJ00279 407 LEERLRRE--------EKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAE 448 LekalrdKegplKlAqTRLenRtyRPNVELCRDqAQyrL.iqEVheiqas L+ l Ke l+ A+ R e + AQ + + + e+++ mFLJ00279 449 LKMQLAKKEEELQAALARVEEEA-----------AQKNMaLKKIRELETQ 487 iarLqqkLaeAkaslkaLenhrlrLqeeIeiKensL..fiDrekCmq.lR i+ Lq+ L+ as+ + e++ L ee+e + L++++D + + q+lR mFLJ00279 488 ISELQEDLESERASRNKAEKQKRDLGEELEALKTELedTLDSTAAQQeLR 537 tslps<-* ++ mFLJ00279 538 SKREQ 542 Filament: domain 1 of 1, from 367 to 697: score -166.1, E = 0.06 *->nEKeqmQnLNDRLAsYI.......dKVRfLEqqNkeLevkieelrqk +EK + L DR A + ++ ++++K +L + + + e+ i++l+++ mFLJ00279 367 KEK---KLLEDRVAEFTtnlmeeeEKSKSLAKLKNKHEAMITDLEER 410 qsrggpasvsrlyslYeteieeLRrqidqltnerarlqlEidnlrealed + +++ +e+e Rr+++ + +l +i l++ +++ mFLJ00279 411 L------R---REEKQRQELEKTRRKLE---GDSTDLSDQIAELQAQIAE 448 frkKyedKe.DL.aaQnqlkdlEialntkeaeLaTaL.eRqeaEndlvgL +++++ +Ke+ L+aa +++ + E+a+ + aL+ +e+E ++ L mFLJ00279 449 LKMQLAKKEeELqAALARVEE-EAAQ------KNMALkKIRELETQISEL 491 RaQiAklEslaaRkdlDeaTLarvDLEnkvEsLqEElaFLKknH...... dl+ + +r +E++ L EEl+ LK +++ ++ mFLJ00279 492 ------------QEDLESERASRNKAEKQKRDLGEELEALKTELedtlds 529 ...........eEEvkeLqaqiqdtgqvnVEmDaarqqEwklDLtkaLrE + +++ ++++e+Ev+ L+++++d + + +a ++E mFLJ00279 530 taaqqelrskrEQEVSILKKTLEDE----AKTHEAQ-----------IQE 564 iRaQYEeiAeknrqeaEewYksKleeLqtaaarngealrsaKeEi.tElR +R+ + + +e ++E ++ ++ + ++ ++l + + E+ +E + mFLJ00279 565 MRQKHSQAVEELADQLE-----QTKRVKATLEKAKQTLENERGELaNEVK 609 RqiQsL..........eiELqslksqnasLErqlaElEe...ryeaelaq +Q ++++++++++ e++Lq+l+ +++ Er ++El ++ + ++ el+ mFLJ00279 610 ALLQGKgdsehkrkkvEAQLQELQVKFSEGERVRTELADkvtKLQVELDS 659 yqalisqlEeeLqqlreE...MarqLrEYQeLLdVKlaLDiEIATYRKLL l+sq ++ +l + + ++ qL++ QeLL mFLJ00279 660 VTGLLSQSDSKSSKLTKDfsaLESQLQDTQELLQ---------------- 693 EGEEsR<-* EE+R mFLJ00279 694 --EENR 697 Myosin_tail_1: domain 1 of 1, from 441 to 1298: score 786.1, E = 1.4e-232 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR +l q el ql++ke+el++ ++ E+E a + + kki+ele++ mFLJ00279 441 ELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQ 487 IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln I+EL+E+LE+ERa+R+KaEkq++DL +ELE+L+ +Le+ ++TaaQ+El+ mFLJ00279 488 ISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELR 537 kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK +KRE+E + L++ LE++ + hE+++ ++R KH++a++El+dQ+eq +++K mFLJ00279 538 SKREQEVSILKKTLEDEAKTHEAQIQEMRQKHSQAVEELADQLEQTKRVK 587 akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKld a +EK+K++l++E +la+++ ++ K+++E k+k+ E+ql+ElqvK mFLJ00279 588 ATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQELQVKFS 637 ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe E +R +++l+ + ++Lq E+ + t l+ ++ s l+k s lesQL + mFLJ00279 638 EGERVRTELADKVTKLQVELDSVTGLLSQSDSKSSKLTKDFSALESQLQD 687 AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa ++++l EE R+++ L+++l+++e ++ s rEqlEEE EAK++le+q + mFLJ00279 688 TQELLQEENRQKLSLSTKLKQMEDEKNSFREQLEEEEEAKRNLEKQIATL 737 naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL a+++ ++K E + E EE+K++l+++++ l +++E+ a+ ++L mFLJ00279 738 HAQVTDMKKKMEDGVGC-LETAEEAKRRLQKDLEGLSQRLEEKVAAYDKL 786 EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq EKtK+RLq+El+Dl ++++++++++s+LEKKqk+FD++laE+K ++ + mFLJ00279 787 EKTKTRLQQELDDLLVDLDHQRQSVSNLEKKQKKFDQLLAEEKTISAKYA 836 aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd E++ A+ eaR+++t++++l ++leE+ +q++ L+R NK+ E DL + mFLJ00279 837 EERDRAEAEAREKETKALSLARALEEAMEQKAELERLNKQFRTEMEDLMS 886 qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE ++++ G++vHELEK +R+LE + +E +++LeE+E+ L+++E+++lR++v+ mFLJ00279 887 SKDDVGKSVHELEKSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVN 936 lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR l+++++++ER+L+ ++E E+++K+++r++++++a+L E E+K+++ a++ mFLJ00279 937 LQAMKAQFERDLQGRDEQSEEKKKQLVRQVREMEAEL-EDERKQRSMAMA 985 lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa KKLE d+++LE D aNk ++ea K+++k+q+q k+ + ++++++ mFLJ00279 986 ARKKLEMDLKDLEAHIDTANKNREEAIKQLRKLQAQMKDCMRELDDTRAS 1035 redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv re++++q ++ E++++ ++aE +L + L++aeRa++qA +E++E+++++ mFLJ00279 1036 REEILAQAKENEKKLKSMEAEMIQLQEELAAAERAKRQAQQERDELADEI 1085 neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaa ++ + +++ ++KR+LE+++a+l+++L+E++ + + +R kKA+ ++ mFLJ00279 1086 ANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRLKKANLQID 1135 rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq + ++L E++h qk+E+ R qLE+q+KeL+++L+E E a+ + K+ I+ mFLJ00279 1136 QINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMESAVKSKYKASIA 1185 KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler LEa+++ LE++Ld+E+++++ + K+ R++e+++K + QvE++++n e+ mFLJ00279 1186 ALEAKIAQLEEQLDNETKERQAASKQVRRTEKKLKDVLLQVEDERRNAEQ 1235 lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA +D+ DK ++K++KRQlEEaEE+aq+ + Rk+QreLEdA+E AD++ mFLJ00279 1236 FKDQADKASTRLKQLKRQLEEAEEEAQRANASRRKLQRELEDATETADAM 1285 EsslnklRqreaKsRr<-* ++++++l+ K Rr mFLJ00279 1286 NREVSSLK---NKLRR 1298 //