hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mib/mib18067/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00271  ( 494 res)   mib18067

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IG       Immunoglobulin                                  91.8      8e-23   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IG         1/3      52   168 ..     1    58 []    27.0   0.0027
IG         2/3     192   316 ..     1    58 []    31.6  0.00011
IG         3/3     328   454 ..     1    58 []    33.0    4e-05

Alignments of top-scoring domains:
IG: domain 1 of 3, from 52 to 168: score 27.0, E = 0.0027
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p+++tv eG+ + L C a+++++++ +++ + ++  +  + ++ + +
   mFLJ00271    52    PSrLTVHEGQELALGClAQtktkkHTHLSvsfgraipeapvgratlq 98   

                   .....................................LtI.nvtpeDses
                      + +++     + +   +  ++  + ++ ++++ +++++++++ Ds  
   mFLJ00271    99 evvglhsdmaveagapyaerlasgelrlskegtdryrMVVgGAQAGDS-- 146  

                   gGtYtCaat.sgsasseqgttLtVl<-*
                    GtY C+a  + ++    g +++V    
   mFLJ00271   147 -GTYHCTAAeWIQDPD--GSWVQVA    168  

IG: domain 2 of 3, from 192 to 316: score 31.6, E = 0.00011
                   *->pp.vtvkeGesvtLtC.as............titWy...........
                      p++    +Ge+++L C++s+  ++++ +   ++ W   + + +++++
   mFLJ00271   192    PGeRRIGPGEPLELLCnVSgalpppgrhaaySVGWEmapagapgpgr 238  

                   .................................LtI.nvtpeDsesgGtY
                      + ++ + ++ +++  +++    +  +++ +L+++ ++p+D+   GtY
   mFLJ00271   239 lvaqldtegigslgpgyedrhiamekvasrtyrLRLeAARPADA---GTY 285  

                   tCaat............sgsasseqgttLtVl<-*
                   +C a+   ++++++ + + sa s  +  ++V+   
   mFLJ00271   286 RCLAKayvrgsgtrlreAASARS-RPLPVHVR    316  

IG: domain 3 of 3, from 328 to 454: score 33.0, E = 4e-05
                   *->pp.vtvkeGesvtLtC.as...........titWy............
                        + tv +Ge+++L C++s  +++++      +W  ++  +  ++++
   mFLJ00271   328    LAgGTVYRGETASLLCnISvrggppglrlaASWWVerpeegelstgp 374  

                   ...................................LtI.nvtpeDsesgG
                    +  ++ ++++    + ++++++ +    ++++++L+++++ peD+   G
   mFLJ00271   375 aqlvggvgqdgvaelgvrpgggpvsvelvgprshrLRLhGLGPEDE---G 421  

                   tYtCaat............sgsasseqgttLtVl<-*
                   +Y Ca +    + + +   +gsa s  ++t++ +   
   mFLJ00271   422 IYHCAPSawvqhadyswyqAGSARS-GPVTVYPY    454  

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