hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib18067/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00271  ( 494 res)   mib18067

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
V-set    Immunoglobulin V-set domain                     13.9      0.025   2
I-set    Immunoglobulin I-set domain                    -12.6       0.13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
V-set      1/2      45   168 ..     1   130 []     0.2     0.58
V-set      2/2     185   303 ..     1   130 []    13.7    0.026
I-set      1/1     186   316 ..     1    97 []   -12.6     0.13

Alignments of top-scoring domains:
V-set: domain 1 of 2, from 45 to 168: score 0.2, E = 0.58
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                        +  + +p+           +tv eG+ + L C  +++++ +    
   mFLJ00271    45    GRQAAT-SPS----------RLTVHEGQELALGCLAQTKTKKH---- 76   

                   gtgsvyWyrqqpp.....Gekpeliiisyytyysysegngtvserfkgrv
                   ++ sv+  r   p+ + +  ++++++  + +    + g ++ +   +g  
   mFLJ00271    77 THLSVSFGR-AIPeapvgRATLQEVV-GLHSDMAVEAGAPYAERLASGEL 124  

                   rfsgnpskgdfsLtIsnlqlsDsGtYyCa.......gggtrLtVl<-*
                   r+s  ++ +++ +    +q+ DsGtY+C   +   +  g +++V    
   mFLJ00271   125 RLSKEGT-DRYRMVVGGAQAGDSGTYHCTaaewiqdPDGSWVQVA    168  

V-set: domain 2 of 2, from 185 to 303: score 13.7, E = 0.026
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      q+ vt   p+          + +  +G+ ++L C +s          
   mFLJ00271   185    QLAVTV-GPG----------ERRIGPGEPLELLCNVS---------- 210  

                   gtgsvyWyrqqpp..................Gekpeliiisyytyysyse
                   g          pp++++   + + +  + +  ++ +l++     + +++ 
   mFLJ00271   211 GA--------LPPpgrhaaysvgwemapagaPGPGRLVA-----QLDTE- 246  

                   gngtvserfkgrvrfsgnpskgdfsLtIsnlqlsDsGtYyCa......gg
                   g g  ++ + +r        + ++ L++  ++++D GtY C  +   +g+
   mFLJ00271   247 GIGSLGPGYEDRHIAMEKVASRTYRLRLEAARPADAGTYRCLakayvrGS 296  

                   gtrLtVl<-*
                   gtrL      
   mFLJ00271   297 GTRLREA    303  

I-set: domain 1 of 1, from 186 to 316: score -12.6, E = 0.13
                   *->PkFtqkpkdveVqeGesarfeCkVtGt.PeP......tVsWfKd...
                         t  p    +  Ge++++ C+V+G  P+P+++   +V W   + +
   mFLJ00271   186    LAVTVGPGERRIGPGEPLELLCNVSGAlPPPgrhaaySVGWEMApag 232  

                   ....Gqplssv.........l.lpsdrfkvtydgGsgtytLtIsnvqpdD
                    +++G+ + + ++++ ++ + +  ++++ +  +  s ty+L+   + p+D
   mFLJ00271   233 apgpGRLVAQLdtegigslgPgYEDRHIAMEKVA-SRTYRLRLEAARPAD 281  

                   sGkYtCvAtNsa........Geaeasae...LtVq<-*
                   +G+Y+C A+  +++++++ +  a+a+ ++ +++V+   
   mFLJ00271   282 AGTYRCLAKAYVrgsgtrlrEAASARSRplpVHVR    316  

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