hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msp/msp04032/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00269  ( 1185 res)   msp04032

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    -68.1    8.8e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1     799  1107 ..     1   231 []   -68.1  8.8e-05

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 799 to 1107: score -68.1, E = 8.8e-05
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik.............
                                     y+a+  ++ g ++A+K+ k++++++ +  +++
   mFLJ00269   799    ---------------YCATCSEdPGSIYAVKICKtpepksasycsps 830  

                   .................................................e
                    + + + +++ ++   + +++   +++++++++ +  +++++ ++++   
   mFLJ00269   831 vpvhfniqqdcghfvasvpssmlaspdtsskdtapavspqppaqeqdcvV 880  

                   rilrEikiLkkdHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrg
                    i rE+                          +++     ++ ++  +  
   mFLJ00269   881 VITREVPHQT--------------------ASDFVRD---SMASHRAEPE 907  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.hvK
                            E++++f++ Q++++Le+L ++gIiHRDL  eN+LL + +  
   mFLJ00269   908 -------VYErRVCFLLLQLCNGLEHLKEHGIIHRDLCLENLLLAHcNP- 949  

                   laDFGlArql........................................
                           q++++++ +++ ++++++ ++  +  ++  ++++++++ ++ 
   mFLJ00269   950 --------QIspgpsatptvptttsrcpsavpaattacqggpgekqlprl 991  

                   .................ttfvGTpeYmAPEvl.........gYgkpavDi
                     ++  + +++++++++  +  +   +APE+++ ++ ++ + + +     
   mFLJ00269   992 iisnflkakqkpggttnLQQKKSQARLAPEIVsasqyrkfdEFQT----- 1036 

                   WSlGcilyElltGkpPFp..qldlifkkig............SpeakdLi
                      G+++yEll    PF+ + + +  +  +++ ++ ++ + +Sp + +L 
   mFLJ00269  1037 ---GILIYELLHQPNPFEvrAQLRERDYRRedlpplptlslySPGLQQLA 1083 

                   kklLvkdPekRlta.eaLedeldikaHPff<-*
                     lL+ dP kR+ ++ea +        + +   
   mFLJ00269  1084 HLLLEADPIKRIRIgEAKR------VLQCL    1107 

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