hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msp/msp04032/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00269 ( 1185 res) msp04032 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain -65.7 0.0018 1 Pkinase_Tyr Protein tyrosine kinase -162.7 0.094 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pkinase 1/1 784 1104 .. 1 287 [] -65.7 0.0018 Pkinase_Tyr 1/1 150 1104 .. 1 272 [] -162.7 0.094 Alignments of top-scoring domains: Pkinase: domain 1 of 1, from 784 to 1104: score -65.7, E = 0.0018 *->yelleklGsGsfGtVykakhkgtgk............iVAvKiikkr +++ ++ +++ g+ + + ++++++i+AvKi k + mFLJ00269 784 LTCNKP-----------CCDSGDAIyycatcsedpgsIYAVKICKTP 819 kekskkdktarrrsEiqilkrL.sHpNI............vrlidvfed. + ks + +++ H NI+++ ++ + + ++ + ++ mFLJ00269 820 EPKS----------ASYCSPSVpVHFNIqqdcghfvasvpSSMLASPDTs 859 ................kdhlylVlEycegGLrlldLfdyls...e.trrk ++++ + +++++ ++ d + +++ +++ +d+++++ ++ r++ mFLJ00269 860 skdtapavspqppaqeQDCVVVITREVPHQ----TASDFVRdsmAsHRAE 905 gpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld.engvvda + e+ +++ +lQ++ gle+L ++giiHRDL +eN+Ll + n+++++ mFLJ00269 906 PEV--YERRVCFLLLQLCNGLEHLKEHGIIHRDLCLENLLLAhCNPQISP 953 ..........................................flKiaDFG +++ +++ ++++++ ++ + ++ ++++++++ ++ ++flK mFLJ00269 954 gpsatptvptttsrcpsavpaattacqggpgekqlprliisnFLK----- 998 lAkklst.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilyel Ak+ + ++++ + +APE++ ++ y +k D + G+++yel mFLJ00269 999 -AKQ--KpGGTtNLQQKKSQARLAPEIVS-ASQY-RKFDEFQTGILIYEL 1043 ltGkpPFsgevqdsldqlqlirkilgpplefdspewdsisrsefrrlpnl l PF + ql + ++ ++ + +s mFLJ00269 1044 LHQPNPFEVR-----AQLRERDYRREDLPPLPTLSLYS------------ 1076 seeakdLikkcLnkDPskRltaeeilqHPwf<-* + +++L +L+ DP kR+ + e++ + mFLJ00269 1077 -PGLQQLAHLLLEADPIKRIRIGEAKRV--L 1104 Pkinase_Tyr: domain 1 of 1, from 150 to 1104: score -162.7, E = 0.094 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie l+ + + l ke as + mFLJ00269 150 LEND------------YCSLV---------------KE-PASGK--- 165 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++d+ + k +G + +P mFLJ00269 166 QQDLSGHFLTSGKC---------VGQAAE-LQP----------------- 188 ldfLrkhr.......................................... + Lr++ ++++ ++ ++++ ++++++++++++ + ++++++ +++ mFLJ00269 189 ASLLRDPVqpepiyaesakrkkaapgpprpepkkeqvpaghsqgqvwtgd 238 .................................................. + ++++++ ++++++ ++ ++ ++ + ++++++++ +++++ mFLJ00269 239 twiqktppswsqdreganpapqvattitviaahpeedhrtiylsspdsav 288 .................................................. + + ++++++++ + +++++ ++ ++++++++ ++++ ++++ +++ mFLJ00269 289 gvqwprgpsnqdlqaseeeplvaqglisreshphnmtentakekpaippk 338 .................................................. +++++++++ ++ ++ ++++++++++++ +++ ++ + + +++ +++ mFLJ00269 339 lsksspggspvspaappltdhsdgntggssvgpqllsrvpanltsschtn 388 .................................................. + + +++ + +++ ++++ ++++++ +++ +++ + +++++ +++ + mFLJ00269 389 gvatagdsakcpppatsssvldqrrpryqtgawsrqcrieeeeevgqels 438 .................................................. ++ +++ ++++ +++++++ ++ ++ +++++++++++++ +++ + + mFLJ00269 439 qswgrelengtadhsnsstwhrlhpidgtsgqnsktnsgmsksasfafef 488 .................................................. ++++++ + +++++++++++ + ++++++ ++ ++++ ++ +++ ++ mFLJ00269 489 pkdrgrleafsppppppksrhllkmnksssdlekvsqssaeslspsfrga 538 .................................................. + + +++++++ +++++ ++++++ +++++++ ++++ + + +++++ mFLJ00269 539 hvsfttgstdslasdsrpcsdggpsyepthsptisgkklfapvpfpsgst 588 .................................................. ++ ++++++ ++++ ++++ ++ +++++ +++++++++ +++ + + mFLJ00269 589 edvspgggpvqppplpqkkivsraasspdgffwtqgspkprtaspklnls 638 .................................................. +++++ +++++ + + ++++++++ +++++ ++ +++ + + + mFLJ00269 639 hsetnvcahdeppfncslnsgnrshhvfssseplekafkgnapwapalgl 688 .................................................. +++++ ++++ + + +++++++ + +++ ++++++ + ++ ++ +++ mFLJ00269 689 anskggcgspslqcraatstsssqlsvssqasssstqlqlhsllssissk 738 .................................................. +++ + ++ +++ + ++ ++ ++++++ + +++ + + + ++ mFLJ00269 739 egtyaklgglytqslarlvtkcedlfmggqkkelrfnenywslfkltcnk 788 .................................................. + ++++ + ++++++ + +++++++ + +++ + + + + mFLJ00269 789 pccdsgdaiyycatcsedpgsiyavkicktpepksasycspsvpvhfniq 838 .................................................. ++ ++ + +++ +++++++++ + +++++ ++++ +++ ++ mFLJ00269 839 qdcghfvasvpssmlaspdtsskdtapavspqppaqeqdcvvvitrevph 888 ...............egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLA ++ ++ +++ +++ ++ + + + lQ ++G+e+L +++++HRDL+ mFLJ00269 889 qtasdfvrdsmashrAEPEVYERRVCFLLLQLCNGLEHLKEHGIIHRDLC 938 ARNcLVse........................................nl N L+++ +++ +++++ +++ ++++++ ++ + ++ ++++++++l mFLJ00269 939 LENLLLAHcnpqispgpsatptvptttsrcpsavpaattacqggpgekQL 988 .vVKIsDFGLaRdi..ynddyYvrkkgggklPvkWmAPEslkygkF.... + Is F a++ ++ ++ +kk+ ++l APE + + +++ + mFLJ00269 989 pRLIISNFLKAKQKpgGTTNLQ-QKKSQARL-----APEIVSASQYrkfd 1032 ...tskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyR.... + +t G+l++E++ qP ++ev ++l+e++yR+++ mFLJ00269 1033 efqT--------GILIYELLH---QP-----NPFEVRAQLRERDYRredl 1066 ..LprPenCPdelYdlMlqCWaedPedRPtFselverL<-* ++Lp + ++ l +l + ++dP +R + e + L mFLJ00269 1067 ppLPTLSLYSPGLQQLAHLLLEADPIKRIRIGEAKRVL 1104 //