hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02475/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00268  ( 241 res)   mtj02475

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SR       Scavenger receptor Cys-rich                    227.4    1.3e-63   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SR         1/2      25   125 ..     1   118 []   121.4  9.7e-32
SR         2/2     131   231 ..     1   118 []   113.8    2e-29

Alignments of top-scoring domains:
SR: domain 1 of 2, from 25 to 125: score 121.4, E = 9.7e-32
                   *->vRLvgGgspcEGRVEVyhnGgGqgqWGTVCDdgWdlrdAnVVCRQLG
                       RLv+G+s+cEGRVE + ++    +W + C  +Wdl+dA V C+QL 
   mFLJ00268    25    FRLVNGSSRCEGRVELLVQD----AWQPLCAANWDLADATVLCHQLN 67   

                   fggavsasgllpAssayfgpgsgpIwldnVrCtGtEssLsdCphsgwgvh
                   +g+av++++     +++fg  +gpI  d ++C GtE++L  Cp s++g  
   mFLJ00268    68 CGYAVATPQ-----GGHFGNVEGPIRTDVFHCVGTEPHLLSCPTSTLGAQ 112  

                   nttCsHggdRnrseDAGVvCs<-*
                      C+       ++ A+  Cs   
   mFLJ00268   113 A--CAL------GNSASALCS    125  

SR: domain 2 of 2, from 131 to 231: score 113.8, E = 2e-29
                   *->vRLvgGgspcEGRVEVyhnGgGqgqWGTVCDdgWdlrdAnVVCRQLG
                      +RL+ G+s+c GRVEV+++G    +WG V D+ WdlrdA VVCRQLG
   mFLJ00268   131    LRLREGQSHCDGRVEVFLDG----TWGRVLDSAWDLRDAAVVCRQLG 173  

                   fggavsasgllpAssayfgpgsgpIwldnVrCtGtEssLsdCph.sgwgv
                   +g+a  a+         +g  + p  l+ V+C G+E++L++C  + ++ v
   mFLJ00268   174 CGEAQLAYD-----APAPGHKTIPVGLSLVHCLGSETHLTQCNVsASLLV 218  

                   hnttCsHggdRnrseDAGVvCs<-*
                   h    +        +DAGVvCs   
   mFLJ00268   219 H---AGT------LRDAGVVCS    231  

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