hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtj/mtj02475/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00268 ( 241 res) mtj02475 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SRCR Scavenger receptor cysteine-rich domain 186.2 5.4e-52 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SRCR 1/2 28 125 .. 1 113 [] 94.2 2.6e-24 SRCR 2/2 134 231 .. 1 113 [] 100.0 4.5e-26 Alignments of top-scoring domains: SRCR: domain 1 of 2, from 28 to 125: score 94.2, E = 2.6e-24 *->vgGssrCeGrVEVrhdgskWgtVCdssWslrdanvdpQaskvCrqLG v+GssrCeGrVE +++W ++C+ +W+l+da v +C qL+ mFLJ00268 28 VNGSSRCEGRVELL-VQDAWQPLCAANWDLADATV------LCHQLN 67 CGgavsll.gpyfsegggPagqreiwldgvnCsGnEtsLsqCpvrvtppg CG av++++g +f+ gP i +d ++C G+E++L Cp + + mFLJ00268 68 CGYAVATPqGGHFGNVEGP-----IRTDVFHCVGTEPHLLSCPTS---TL 109 lsrqcshdgedagVvCs<-* + ++c g++a+ Cs mFLJ00268 110 GAQACAL-GNSASALCS 125 SRCR: domain 2 of 2, from 134 to 231: score 100.0, E = 4.5e-26 *->vgGssrCeGrVEVrhdgskWgtVCdssWslrdanvdpQaskvCrqLG G s C GrVEV++dg Wg V ds W+lrda v vCrqLG mFLJ00268 134 REGQSHCDGRVEVFLDG-TWGRVLDSAWDLRDAAV------VCRQLG 173 CGgavsll.gpyfsegggPagqreiwldgvnCsGnEtsLsqCpvrvtppg CG a+ +++ p ++ ++P + l+ v+C G Et+L qC+v+ + mFLJ00268 174 CGEAQLAYdAPAPGHKTIP-----VGLSLVHCLGSETHLTQCNVS--ASL 216 lsrqcshdgedagVvCs<-* l+++ +dagVvCs mFLJ00268 217 LVHAGT--LRDAGVVCS 231 //