hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh05102/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00263  ( 695 res)   mnh05102

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    194.8    8.3e-54   1
TyrKc    Tyrosine kinase, catalytic domain              -56.3    1.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1       1   194 [.     1   231 []   194.8  8.3e-54
TyrKc      1/1       1   194 [.     1   280 []   -56.3  1.2e-07

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 1 to 194: score 194.8, E = 8.3e-54
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                                                     
   mFLJ00263     -    ----------------------------------------------- -    

                   PNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrkvlsE.e
                    NI+kLy v+e++d ly+V+E++ +  G++fd+l ++g+      lsE+e
   mFLJ00263     1 -NIIKLYQVMETkDMLYIVTEFAKN--GEMFDYLTSNGH------LSEnE 41   

                   arfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql.
                   ar  f+Qilsa+eY+H+++I+HRDLK eN+LLds+  +KlaDFG+  +++
   mFLJ00263    42 ARQKFWQILSAVEYCHNHHIVHRDLKTENLLLDSnmDIKLADFGFGNFYk 91   

                   .....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkpPFp
                   ++++ +t +G+p Y APEv++++ Y +p  D+WSlG++ly l++G  PF+
   mFLJ00263    92 pgeplSTWCGSPPYAAPEVFegkEYEGPQLDVWSLGVVLYVLVCGSLPFD 141  

                   ..qldlifkkig..........SpeakdLikklLvkdPekRlta.eaLed
                   +++l ++ +++++++ + +   S+++  Li+++Lv+dP+kR+t+ ++ + 
   mFLJ00263   142 gpNLPTLRQRVLegrfripffmSQDCETLIRRMLVVDPAKRITIaQIRQ- 190  

                   eldikaHPff<-*
                         H ++   
   mFLJ00263   191 ------HRWM    194  

TyrKc: domain 1 of 1, from 1 to 194: score -56.3, E = 1.2e-07
                   *->ltlgkkLGeGaFGeVykGtlkieVAVKtLkedakeeFlrEakiMkkl
                                                                     
   mFLJ00263     -    ----------------------------------------------- -    

                   GgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknrpkl
                        Ni+kL+ v  ++       + l+iv+E++++G   dyL +n++ l
   mFLJ00263     1 -----NIIKLYQVMETK-------DMLYIVTEFAKNGEMFDYLTSNGH-L 37   

                   slsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsDFGLs
                   s  +  +  +QI +  eY + +++vHRDL + N L+++n  +K +DFG  
   mFLJ00263    38 SENEARQKFWQILSAVEYCHNHHIVHRDLKTENLLLDSNMDIKLADFGFG 87   

                   RdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkF.tskSDV
                    + + +       +  ++    +g    P+   APE++  ++++ ++ DV
   mFLJ00263    88 NFYKPG-------EPLSTW---CGS--PPYA--APEVFEGKEYeGPQLDV 123  

                   WSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPendlpi
                   WS GV+L+ ++  G  P  g      +   +++++ +G R ++P      
   mFLJ00263   124 WSLGVVLY-VLVCGSLPFDG-----PNLPTLRQRVLEG-RFRIPFF---- 162  

                   SsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                       ++++  +l+++    dP++R t +++++++ +   
   mFLJ00263   163 ----MSQDCETLIRRMLVVDPAKRITIAQIrqHRWM    194  

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