hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh05102/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00263  ( 695 res)   mnh05102

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       192.0    9.2e-54   1
Pkinase_Tyr Protein tyrosine kinase                     -50.9      1e-08   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1       1   192 [.     1   272 []   -50.9    1e-08
Pkinase       1/1       1   194 [.     1   287 []   192.0  9.2e-54

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 1 to 192: score -50.9, E = 1e-08
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie
                                          +           +K       ++    
   mFLJ00263     1    --------------------N----------IIKLY---QVMET--- 11   

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL
                              k +                       lyiVtE++++G  
   mFLJ00263    12 -----------KDM-----------------------LYIVTEFAKNGEM 27   

                   ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs
                    d+L +   +++L+  +  +  +Qi ++ eY +++++vHRDL + N L++
   mFLJ00263    28 FDYLTS---NGHLSENEARQKFWQILSAVEYCHNHHIVHRDLKTENLLLD 74   

                   enlvVKIsDFGLaRdiynddyYvrkkgggklPv.......kWmAPEslky
                   +n+ +K +DFG            + ++    P ++  +++   APE++  
   mFLJ00263    75 SNMDIKLADFGFGNFY-------KPGE----PLstwcgspPYAAPEVFEG 113  

                   gkF.tskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr
                   ++++  + DVWS GV+L+ ++  G  P + g     + +++ e + R p 
   mFLJ00263   114 KEYeGPQLDVWSLGVVLYVLVC-GSLP-FDGPNLPTLRQRVLEGRFRIPF 161  

                   PenCPdelYdlMlqCWaedPedRPtFselverL<-*
                    +  +++  +l+++    dP++R t ++++++    
   mFLJ00263   162 FM--SQDCETLIRRMLVVDPAKRITIAQIRQHR    192  

Pkinase: domain 1 of 1, from 1 to 194: score 192.0, E = 9.2e-54
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                                                     
   mFLJ00263     -    ----------------------------------------------- -    

                   rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse
                                NI++l+ v+e+kd ly+V+E++ +G    + fdyl+ 
   mFLJ00263     1 -------------NIIKLYQVMETKDMLYIVTEFAKNG----EMFDYLT- 32   

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv
                     ++g l  se+ea+  ++Qil+++eY+H++ i+HRDLK eN+Lld+n++
   mFLJ00263    33 --SNGHL--SENEARQKFWQILSAVEYCHNHHIVHRDLKTENLLLDSNMD 78   

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   +    K+aDFG+  +  ++++++l+t +G+p+Y+APEv  g ++ g+  D
   mFLJ00263    79 I----KLADFGFGNF--YkPGEpLSTWCGSPPYAAPEVFEGKEYEGPQLD 122  

                   vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi
                   vWSlGv+ly l++G +PF+g      +   l +++l+++++++++ +   
   mFLJ00263   123 VWSLGVVLYVLVCGSLPFDGP-----NLPTLRQRVLEGRFRIPFFMS--- 164  

                   srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                               +++  Li+++L +DP+kR+t+++i qH w+   
   mFLJ00263   165 ------------QDCETLIRRMLVVDPAKRITIAQIRQHRWM    194  

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