hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid06072/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00261  ( 183 res)   mid06072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_2    Variant SH3 domain                              42.4      1e-08   1
SH3_1    SH3 domain                                      40.5    3.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1      99   155 ..     1    58 []    40.5  3.8e-08
SH3_2      1/1     100   155 ..     1    69 []    42.4    1e-08

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 99 to 155: score 40.5, E = 3.8e-08
                   *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke
                      ++v+ L +Y++re dEL ++k Dv+ v ++s dgW++g ++++g ++
   mFLJ00261    99    PQVQCLRAYKPRENDELALEKADVVMVTQQSSDGWLEGVRLSDG-EQ 144  

                   GliPsNYVepv<-*
                   G++P++ Ve +   
   mFLJ00261   145 GWFPVQQVEFI    155  

SH3_2: domain 1 of 1, from 100 to 155: score 42.4, E = 1e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                       +++++ y++ + ++e      L+l+k dvv v+    ++++dgw +
   mFLJ00261   100    QVQCLRAYKP-RENDE------LALEKADVVMVT----QQSSDGWLE 135  

                   geslggGrrrRGlvPssaveel<-*
                   g +l++G+   G++P + ve +   
   mFLJ00261   136 GVRLSDGEQ--GWFPVQQVEFI    155  

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