hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej01587/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00258  ( 663 res)   mej01587

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     83.1    3.4e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     116   213 ..     1    82 []    36.0  5.3e-06
PH         2/2     314   409 ..     1    82 []    48.1  1.1e-09

Alignments of top-scoring domains:
PH: domain 1 of 2, from 116 to 213: score 36.0, E = 5.3e-06
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk...kpkgsipLsg
                        ++ +Ll+k+++++w k   v+++ +Ll+yks++++ p  ++ L+ 
   mFLJ00258   116    CRICAFLLRKKrFgQWAKQLTVIKEEQLLCYKSSkdrQPHLRLALDV 162  

                   csvre.p......cFeivt.dr...tlllqAeseeereeWvealqsaiak
                   c+v   p++++++  e++++++ +++l+l+  s e++eeW++ +++++++
   mFLJ00258   163 CTVIYvPkdsrhkRHELRFsQGateVLVLALQSREQAEEWLKVIREVSRP 212  

                   a<-*
                       
   mFLJ00258   213 I    213  

PH: domain 2 of 2, from 314 to 409: score 48.1, E = 1.1e-09
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk....kpkgsipLsg
                      v ++G+L ++ +++wk+r+++L+ ++L+++k++++ +++  si L+g
   mFLJ00258   314    VPCCGYLNVLVNqGWKERWCRLRCNTLYFHKDRtdlhTHVNSIALRG 360  

                   csvre.p......cFeivt.dr.tlllqAeseeereeWvealqsaiaka<
                   c+v ++ +++++ +F+i  + +++ +l A+ +e++ +W+  l   + +  
   mFLJ00258   361 CEVAPgFgprhpfAFRILRnRQeVAILEASCSEDMGRWLGLLLVEMGSK  409  

                   -*
                     
   mFLJ00258     -    -    

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