hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej01587/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00258  ( 663 res)   mej01587

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PH        PH domain                                      92.3    9.6e-24   2
Vicilin_N Vicilin N terminal region                     -74.9       0.72   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PH          1/2     116   211 ..     1    92 []    32.9  7.3e-06
PH          2/2     314   407 ..     1    92 []    59.6  6.7e-14
Vicilin_N   1/1     431   548 ..     1   183 []   -74.9     0.72

Alignments of top-scoring domains:
PH: domain 1 of 2, from 116 to 211: score 32.9, E = 7.3e-06
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk.kkpkgsipLsg
                      + ++ +Ll+k ++++w k   v+++ +Ll+yk++k+ +p   + L+ 
   mFLJ00258   116    CRICAFLLRKKRFGQWAKQLTVIKEEQLLCYKSSKdRQPHLRLALDV 162  

                   iqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsair<
                   ++v +vp+  r+   e+r++++ +e+l+l+  s e+++eW+k i++++r 
   mFLJ00258   163 CTVIYVPKDSRHKRHELRFsQGatEVLVLALQSREQAEEWLKVIREVSR  211  

                   -*
                     
   mFLJ00258     -    -    

PH: domain 2 of 2, from 314 to 407: score 59.6, E = 6.7e-14
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                      v ++G+L +   + +wk+R++ L+ ++L+++kd+++ ++++ si L+
   mFLJ00258   314    VPCCGYLNVLV-NQGWKERWCRLRCNTLYFHKDRTdlHTHVNSIALR 359  

                   giqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<-
                   g++v +   ++++++F+i  + +e+ +l+a+ +e++ +W+  +  ++   
   mFLJ00258   360 GCEVAPGFGPRHPFAFRILRnRQEVAILEASCSEDMGRWLGLLLVEMG   407  

                   *
                    
   mFLJ00258     -   -    

Vicilin_N: domain 1 of 1, from 431 to 548: score -74.9, E = 0.72
                   *->pGRrnYeDDPqqrYEqCqRRCesetrGqrEQqqCEeRCkeqykE..e
                       GR +        Y q    C+ +  ++r           +y E + 
   mFLJ00258   431    AGRNS------FLYAQS---CQDQWPEPR-----------IYDEvpY 457  

                   qqqqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCerrYEkeqqqQ
                   ++ q   +E+PQ      +    q     Rh   C  +  r   + + + 
   mFLJ00258   458 EKVQ---DEEPQ------RPTGAQVK---RHASSCSEKSHRADPQVKVK- 494  

                   QKRYEEQQREDEEKYEERmKEEDNKRDPqqRqyqeCQqRCqqQEQrPrrq
                                           +   +  qy+  + R ++      r+
   mFLJ00258   495 ------------------------RHASSANQYKYGKNRAEEDA----RR 516  

                   QQCqReCREQYqEqqerGeeenknPQWReeeeersEEG<-*
                   +   +e  E+ +E   r e         + e+ +  E    
   mFLJ00258   517 YLVEKERLEKEKE-TIRTELTAL-----RQEKKELKEA    548  

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