hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid03069/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00257  ( 849 res)   mid03069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA_4    Divergent AAA domain                            92.8    6.6e-24   1
ResIII   Type III restriction enzyme, res subunit       -32.1       0.14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA_4      1/1     173   274 ..     1   108 []    92.8  6.6e-24
ResIII     1/1     511   659 ..     1   244 []   -32.1     0.14

Alignments of top-scoring domains:
AAA_4: domain 1 of 1, from 173 to 274: score 92.8, E = 6.6e-24
                   *->FANltdGGyYlilGVeDkgrefivGvenkpdkdleellnsinnrikP
                      FAN t+GGy l++GV+Dk +  i+G+++ ++ d+++l+  +n+ i  
   mFLJ00257   173    FAN-TQGGY-LFIGVDDKST--ILGCPK-DNVDRDSLKTVANEAISK 214  

                   spnpeieeikipikvegkkiivievpegpekpypckkkkvenlkggvYiR
                    p++++++ k ++kv+  + ++  ++eg+   y c  +kve+++++v+  
   mFLJ00257   215 LPVFHFCSSKDKDKVSYETRVIDVFQEGNLYGYLCV-IKVEPFCCAVFSE 263  

                   vgdsdrpatre<-*
                    + s+++  ++   
   mFLJ00257   264 APISWMVDKEK    274  

ResIII: domain 1 of 1, from 511 to 659: score -32.1, E = 0.14
                   *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG
                        l+   ++  e l +s+ k               + + ++   GsG
   mFLJ00257   511    EILNLLTAQQYEILSKSLRKT--------------RELFVHGLPGSG 543  

                   KTltaakiliarllkkqqklkhg.riddskvLFlVprkdLleQal.eeF.
                   KT++a+k ++ ++ +      +  + d  ++L ++ ++ L +  + +++ 
   mFLJ00257   544 KTIIAMK-IMEKIRN-----TFHcETD--RILYICENQPLRDFIQaKNIc 585  

                   .....tkfeskkkkefknpgvdkklkvltdnqkdsalegkskkndieiif
                   +  +++ f++++++                                    
   mFLJ00257   586 qavtrETFMKDYFET----------------------------------- 600  

                   ttiQkLskalklgkendeeekskstesvvglrlavesleflldefdliIi
                                                      + ++        iI+
   mFLJ00257   601 -----------------------------------NRIQ-------HIIV 608  

                   DEaHrssaktksakededatklevyrkilek.w.e.le.l.nk.kyfkpa
                   DEa  +  +++ +           y+k   k+ + + +  + +   f ++
   mFLJ00257   609 DEAQNFCTEDGNW-----------YEKA--KgItRrMKcCpGIlWIFLDY 645  

                   fl...LGlTATPer<-*
                   f++++L  ++ P++   
   mFLJ00257   646 FQtshLKKSGLPNF    659  

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