hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej02301/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00256  ( 1000 res)   mej02301

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MyTH4    Domain in Myosin and Kinesin Tails             196.9    1.9e-54   1
B41      Band 4.1 homologues                            175.9      4e-48   2
SH3      Src homology 3 domains                          39.2    5.4e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/2      77   296 ..     1   232 []    68.9  6.6e-16
SH3        1/1     388   450 ..     1    58 []    39.2  5.4e-07
MyTH4      1/1     528   677 ..     1   166 []   196.9  1.9e-54
B41        2/2     679   896 ..     1   232 []   107.6  1.4e-27

Alignments of top-scoring domains:
B41: domain 1 of 2, from 77 to 296: score 68.9, E = 6.6e-16
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      s+k++ + V l  g +l++ vds++t +e++++v++k+gl  r+  +
   mFLJ00256    77    SKKHIPIQVILATGRSLTISVDSASTSREICQHVAQKQGL--RDNLG 121  

                   FgLqfedkded..............shWldpaktilkqdvkspksepltl
                   F+Lq++  d+  + +++ ++  +    ++++a++ ++  ++    +p++ 
   mFLJ00256   122 FSLQVAVYDKFwslgsgcdhlmdavAQCEQLARERGESQRQ----APWRI 167  

                   yFRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeal
                   yFR+ F++p+     ++ +eDp++++l+y Qv + + sG++  ++eee++
   mFLJ00256   168 YFRKEFFTPW-----HDSQEDPVSTELIYHQVLRGVWSGEYNFEKEEELV 212  

                   lLAaLalqaefGdydpeeeekkkslkhvakelslkrflPkqlldsikasf
                   +L a ++++++G   ++           a  ++l+ ++P +l ++++   
   mFLJ00256   213 ELLARHCYVQLGATVKS----------NAVQELLPSCVPSKLYRTKS--- 249  

                   lqiqltlkewrerIvelhkeh....aglspeeaklkYLelarrLpptYGv
                         +++w + + ++h + + ++++ +p     + +e ar L p+  +
   mFLJ00256   250 ------PEKWASLVTAAHAKAqytqSKATPLAVREQTVEAARLLWPLLFS 293  

                   elF<-*
                   +lF   
   mFLJ00256   294 RLF    296  

SH3: domain 1 of 1, from 388 to 450: score 39.2, E = 5.4e-07
                   *->eyvvAlYDyea.qnedELsFkkGDiitvleks....ddgWweGelnr
                      +++ Al D  a+++   L+FkkGD +++++k +   +++W  G+++r
   mFLJ00256   388    VFAMALQDRRAtDDITLLPFKKGDLLILTKKQgllaSENWALGQNDR 434  

                   tGkeGlfPsnYVeeie<-*
                   tGk+Gl+P+ ++  i+   
   mFLJ00256   435 TGKTGLVPTACLYTIP    450  

MyTH4: domain 1 of 1, from 528 to 677: score 196.9, E = 1.9e-54
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      +s++P++++LLk  +dk+++  +A++iF+aILk+ GD+P+ +     
   mFLJ00256   528    YSPEPLRQPLLKSVHDKAKLRDAACQIFLAILKYTGDYPSRQ----- 569  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                   ++++lel++++++++l+ p+L+DE+YCQ+ KQlt
   mFLJ00256   570 ----------------SWHSLELTDQMFSLALQDPALQDELYCQILKQLT 603  

                   k........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql
                   +++ + +++R+W+LL+lctglFpP + +ll++ ++F+ +r+++p      
   mFLJ00256   604 HnsirfseeRAWQLLWLCTGLFPPGK-TLLPHAQKFIDSRKKKP------ 646  

                   maqglakycle........GaRkqpPsrlEleAik<-*
                       la +c+++ ++  + G+RkqpP+ +E++A     
   mFLJ00256   647 ----LALDCSRrlhrvlrvGPRKQPPHDVEVKAAE    677  

B41: domain 2 of 2, from 679 to 896: score 107.6, E = 1.4e-27
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      +   +++ Vyl+++t+++ ev+ss+++++l+e +  +l l   + ++
   mFLJ00256   679    NVSKLHHEVYLPNDTSKSMEVGSSSRVRDLCEGIGTRLQL--ASWDG 723  

                   FgLqfedkded................shWldpaktilkqdvkspksepl
                    +L+ +++d++ + ++++   ++ ++ s+W + +++++++      ++p+
   mFLJ00256   724 CSLFIKITDKVislkegdfffdslrqvSDWVKKNRPQKEGASV---TLPY 770  

                   tlyFRvkFyppdwhgppeqlkeDptryn.llylQvrddilsGrlpcpsee
                   +++F++k++ +       ++  D  +   l+y Q    +l+G ++c+ +e
   mFLJ00256   771 QVFFMRKLWLNV------TPGKDVNADTiLHYHQELPKYLRGFHKCS-RE 813  

                   eallLAaLalqaefGdydpeeeekkkslkhvakelslkrflPkqlldsik
                   +a+ L+ L++ ++fG ++++           +  + lk+++P+       
   mFLJ00256   814 DAIHLGGLICKIQFGSDSSQ---------LASVSKVLKELVPQN------ 848  

                   asflqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpptYGve
                      l + ++ +ew++ ++ ++ + ++++ +eak+++L+   r+p t+G++
   mFLJ00256   849 ---LTRLMSSEEWKKSLLLECDKNKRKTVAEAKVEFLKYMYRWP-TFGSA 894  

                   lF<-*
                   +F   
   mFLJ00256   895 FF    896  

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