hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02301/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00256  ( 1000 res)   mej02301

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MyTH4    MyTH4 domain                                   199.0    7.3e-56   2
SH3_2    Variant SH3 domain                              20.5       0.03   1
SH3_1    SH3 domain                                       7.4      0.028   1
Band_41  FERM domain (Band 4.1 family)                  -79.0       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MyTH4      1/2       1    76 [.     1   118 []    58.7  1.3e-13
SH3_1      1/1     388   449 ..     1    58 []     7.4    0.028
SH3_2      1/1     389   449 ..     1    69 []    20.5     0.03
MyTH4      2/2     571   677 ..     1   118 []   142.0  1.1e-38
Band_41    1/1     704   896 ..     1   210 []   -79.0     0.12

Alignments of top-scoring domains:
MyTH4: domain 1 of 2, from 1 to 76: score 58.7, E = 1.3e-13
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                                                    Ql++N +   +S +rGW
   mFLJ00256     1    ------------------------------QLSENYK--TSSRARGW 15   

                   eLlylctgtFpPSeellkyLsEqFlhrraheqlsgpelegyaadcqerLk
                   +Ll+lc+g+FpPSe++ kyL  +F++  ++         +y ++c erL+
   mFLJ00256    16 ILLSLCLGCFPPSERFMKYLL-NFISQGPP---------SYGPFCAERLQ 55   

                   ktqknGsRkypPsrlEieAik<-*
                   +t+ nG R  pP +lE++A k   
   mFLJ00256    56 RTFANGVRAEPPTWLELQAVK    76   

SH3_1: domain 1 of 1, from 388 to 449: score 7.4, E = 0.028
                   *->kkvvALYDYeare.sdELsFkkGDvitvleksdd....gWWkgrlkg
                       ++ AL D  a+++   L+FkkGD +++ +k+    +++W  g++++
   mFLJ00256   388    VFAMALQDRRATDdITLLPFKKGDLLILTKKQGLlaseNWALGQNDR 434  

                   tgGkeGliPsNYVepv<-*
                   tg k+Gl+P+ ++  +   
   mFLJ00256   435 TG-KTGLVPTACLYTI    449  

SH3_2: domain 1 of 1, from 389 to 449: score 20.5, E = 0.03
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd....
                      ++ a++d  a td         L +kkGd++ ++     k+++   +
   mFLJ00256   389    FAMALQDRRA-TDDIT-----LLPFKKGDLLILT-----KKQGllas 424  

                   .gwwlgeslgg.GrrrRGlvPssaveel<-*
                   ++w lg + +++G++  GlvP+ ++  +   
   mFLJ00256   425 eNWALGQN-DRtGKT--GLVPTACLYTI    449  

MyTH4: domain 2 of 2, from 571 to 677: score 142.0, E = 1.1e-38
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                        +++l+++ +++++  p+L DE+YCQi+KQlt+N +  + S++r+W
   mFLJ00256   571    WHSLELTDQMFSLALQDPALQDELYCQILKQLTHNSI--RFSEERAW 615  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqlsgpelegyaadcqerLk
                   +Ll+lctg+FpP ++ll++ +  F+ +r+  +l        a+dc +rL+
   mFLJ00256   616 QLLWLCTGLFPPGKTLLPHAQ-KFIDSRKKKPL--------ALDCSRRLH 656  

                   ktqknGsRkypPsrlEieAik<-*
                   +  + G+Rk+pP+ +E+ A+    
   mFLJ00256   657 RVLRVGPRKQPPHDVEVKAAE    677  

Band_41: domain 1 of 1, from 704 to 896: score -79.0, E = 0.12
                   *->ctvtllDstveeFkveKkdkGqvLLdkVf.khLglrEkdYFGLQylD
                       +v +l     +      + G  L+ k  +k + l E d+F     D
   mFLJ00256   704    -RVRDLCEGIGTRLQLASWDGCSLFIKITdKVISLKEGDFF----FD 745  

                   dDnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYp.....eDvpne
                      s  + + W + +++ ++   ++  Py+ +F +K   + +++ Dv+++
   mFLJ00256   746 ---SLRQVSDWVKKNRPQKEG-ASVTLPYQVFFMRKLWLnvtpgKDVNAD 791  

                   LrqeiTrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslH
                    +      l + Q     l G + C+ e A  L++  + ++fG   ++l 
   mFLJ00256   792 TI------LHYHQELPKYLRGFHKCSREDAIHLGGLICKIQFGSDSSQLA 835  

                   kaGRtCLCYLsdekllPq...RVlnqkqltkddfEekIaelHkeHrGmsp
                    ++      + +++l Pq+ +R +       +++ +            + 
   mFLJ00256   836 SVS------KVLKELVPQnltRLMS-----SEEWKKSLLLECDKNKRKTV 874  

                   deAeleYLkiArdLemYGVdff<-*
                   +eA++e+Lk   +  + G  ff   
   mFLJ00256   875 AEAKVEFLKYMYRWPTFGSAFF    896  

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