hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21306/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00248  ( 491 res)   mfj21306

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    69.3    4.8e-16   5
LRR_PS   Leucine-rich repeat, plant-specific subfamil    62.1    7.1e-14   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_PS     1/8      71    93 ..     1    24 []     5.2  2.6e+02
LRR_PS     2/8      94   116 ..     1    24 []     0.5    1e+03
LRR_TYP    1/5      94   116 ..     1    24 []     7.1       57
LRR_PS     3/8     117   139 ..     1    24 []    24.5    0.015
LRR_TYP    2/5     117   140 ..     1    24 []    32.6  5.2e-05
LRR_PS     4/8     140   161 ..     1    24 []     0.5    1e+03
LRR_PS     5/8     162   184 ..     1    24 []    18.0      1.4
LRR_TYP    3/5     162   184 ..     1    24 []    16.8      3.2
LRR_PS     6/8     185   207 ..     1    24 []    21.3     0.14
LRR_TYP    4/5     185   208 ..     1    24 []    24.7    0.013
LRR_PS     7/8     208   229 ..     1    24 []     5.5  2.3e+02
LRR_PS     8/8     230   252 ..     1    24 []     5.7  2.2e+02
LRR_TYP    5/5     230   253 ..     1    24 []     7.8       47

Alignments of top-scoring domains:
LRR_PS: domain 1 of 8, from 71 to 93: score 5.2, E = 2.6e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L+  ++ dLs N++  e+P+  ++   
   mFLJ00248    71    LSDITQADLSRNRFP-EVPEAACQ    93   

LRR_PS: domain 2 of 8, from 94 to 116: score 0.5, E = 1e+03
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L sL+ L L++N L   + + lgn   
   mFLJ00248    94    LVSLEGLSLYHNCLK-CLNPALGN    116  

LRR_TYP: domain 1 of 5, from 94 to 116: score 7.1, E = 57
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+ L+L +N L+ L p + ++   
   mFLJ00248    94    LVSLEGLSLYHNCLKCLNPAL-GN    116  

LRR_PS: domain 3 of 8, from 117 to 139: score 24.5, E = 0.015
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      Lt L++L+Ls N+Ls ++P+ +++   
   mFLJ00248   117    LTALTYLNLSRNQLS-SLPPYICQ    139  

LRR_TYP: domain 2 of 5, from 117 to 140: score 32.6, E = 5.2e-05
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+ L+Ls+NqL+sLPp ++q    
   mFLJ00248   117    LTALTYLNLSRNQLSSLPPYICQL    140  

LRR_PS: domain 4 of 8, from 140 to 161: score 0.5, E = 1e+03
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L+ L+vL +snN+L   +P++++    
   mFLJ00248   140    LP-LRVLIISNNKLG-ALPPDIST    161  

LRR_PS: domain 5 of 8, from 162 to 184: score 18.0, E = 1.4
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L sL++Ld+s+N L  ++P +l++   
   mFLJ00248   162    LGSLRQLDVSSNELQ-SLPVELCS    184  

LRR_TYP: domain 3 of 5, from 162 to 184: score 16.8, E = 3.2
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr Ld s+N L+sLP ++  +   
   mFLJ00248   162    LGSLRQLDVSSNELQSLPVEL-CS    184  

LRR_PS: domain 6 of 8, from 185 to 207: score 21.3, E = 0.14
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L+sL+ L++  N+Ls ++P++lg+   
   mFLJ00248   185    LRSLRDLNVRRNQLS-TLPDELGD    207  

LRR_TYP: domain 4 of 5, from 185 to 208: score 24.7, E = 0.013
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr L+  +NqL++LP+++ +    
   mFLJ00248   185    LRSLRDLNVRRNQLSTLPDELGDL    208  

	[output cut off at A = 10 top alignments]
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