hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21306/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00248  ( 491 res)   mfj21306

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             64.8    1.8e-15   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/8      73    95 ..     1    25 []     0.7  1.5e+03
LRR_1      2/8      96   118 ..     1    25 []    12.4       11
LRR_1      3/8     119   138 ..     1    25 []     9.4       55
LRR_1      4/8     141   163 ..     1    25 []    12.3       11
LRR_1      5/8     164   186 ..     1    25 []    15.9     0.95
LRR_1      6/8     187   206 ..     1    25 []    10.2       41
LRR_1      7/8     209   231 ..     1    25 []    12.4       11
LRR_1      8/8     232   255 ..     1    25 []     3.9  4.5e+02

Alignments of top-scoring domains:
LRR_1: domain 1 of 8, from 73 to 95: score 0.7, E = 1.5e+03
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       ++  dLs+ N ++ +++p+    l    
   mFLJ00248    73    DITQADLSR-N-RF-PEVPEAAcQLV    95   

LRR_1: domain 2 of 8, from 96 to 118: score 12.4, E = 11
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +Le L+L + N  l ++l p l++l+   
   mFLJ00248    96    SLEGLSLYH-N-CL-KCLNPALgNLT    118  

LRR_1: domain 3 of 8, from 119 to 138: score 9.4, E = 55
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                       L++L+Ls+ N +ls slpp        
   mFLJ00248   119    ALTYLNLSR-N-QLS-SLPP--YIC    138  

LRR_1: domain 4 of 8, from 141 to 163: score 12.3, E = 11
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L++L +s+ N +l g lpp+++ l    
   mFLJ00248   141    PLRVLIISN-N-KL-GALPPDIsTLG    163  

LRR_1: domain 5 of 8, from 164 to 186: score 15.9, E = 0.95
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+ Ld+s+ N +l+ slp +l +l+   
   mFLJ00248   164    SLRQLDVSS-N-ELQ-SLPVELcSLR    186  

LRR_1: domain 6 of 8, from 187 to 206: score 10.2, E = 41
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +L+ L++++ N +ls +lp+   l    
   mFLJ00248   187    SLRDLNVRR-N-QLS-TLPD--ELG    206  

LRR_1: domain 7 of 8, from 209 to 231: score 12.4, E = 11
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L  Ld+s+ N ++s  +p s+  l+   
   mFLJ00248   209    PLVRLDFSC-N-RIS-RIPVSFcRLR    231  

LRR_1: domain 8 of 8, from 232 to 255: score 3.9, E = 4.5e+02
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L+++ L++ N +l+ s p+  + + +   
   mFLJ00248   232    HLQVVLLDS-N-PLQ-SPPAQiClKGK    255  

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