hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm02140/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00246 ( 1454 res) mpm02140 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ANK ankyrin repeats 611.7 2.5e-179 25 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ANK 1/25 206 235 .. 1 30 [] 8.2 3.7e+02 ANK 2/25 239 268 .. 1 30 [] 19.2 0.57 ANK 3/25 273 302 .. 1 30 [] 28.5 0.0009 ANK 4/25 306 335 .. 1 30 [] 34.6 1.4e-05 ANK 5/25 339 368 .. 1 30 [] 36.1 4.7e-06 ANK 6/25 373 402 .. 1 30 [] 29.2 0.00057 ANK 7/25 406 435 .. 1 30 [] 30.2 0.00028 ANK 8/25 439 468 .. 1 30 [] 25.2 0.0089 ANK 9/25 472 501 .. 1 30 [] 38.8 7.3e-07 ANK 10/25 506 535 .. 1 30 [] 23.5 0.029 ANK 11/25 536 565 .. 1 30 [] 31.4 0.00013 ANK 12/25 569 598 .. 1 30 [] 27.9 0.0014 ANK 13/25 602 631 .. 1 30 [] 28.7 0.00079 ANK 14/25 636 665 .. 1 30 [] 24.3 0.018 ANK 15/25 669 698 .. 1 30 [] 21.5 0.12 ANK 16/25 1056 1085 .. 1 30 [] 23.2 0.035 ANK 17/25 1089 1118 .. 1 30 [] 32.9 4.2e-05 ANK 18/25 1123 1152 .. 1 30 [] 22.3 0.069 ANK 19/25 1156 1185 .. 1 30 [] 30.2 0.00028 ANK 20/25 1191 1220 .. 1 30 [] 33.9 2.2e-05 ANK 21/25 1225 1254 .. 1 30 [] 26.9 0.0028 ANK 22/25 1257 1286 .. 1 30 [] 1.2 3.2e+03 ANK 23/25 1292 1321 .. 1 30 [] 25.0 0.01 ANK 24/25 1325 1354 .. 1 30 [] 34.3 1.7e-05 ANK 25/25 1358 1391 .. 1 30 [] 19.0 0.65 Alignments of top-scoring domains: ANK: domain 1 of 25, from 206 to 235: score 8.2, E = 3.7e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* + L A++ g+++ v+ Lld+g ++n+ mFLJ00246 206 VDTRSLAEACSDGDVNAVRKLLDEGRSVNE 235 ANK: domain 2 of 25, from 239 to 268: score 19.2, E = 0.57 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G + L lA++ g++e+++ Ll a++++ mFLJ00246 239 EGESLLCLACSAGYYELAQVLLAMHANVED 268 ANK: domain 3 of 25, from 273 to 302: score 28.5, E = 0.0009 *->dGrTpLHlAaengnlevvklLldkgadina<-* + TpL+ A + g+l++vklLl ++ad+n mFLJ00246 273 GDITPLMAASSGGYLDIVKLLLLHDADVNS 302 ANK: domain 4 of 25, from 306 to 335: score 34.6, E = 1.4e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+L +A++ g +++vk Ll++ga+i++ mFLJ00246 306 TGNTALTYACAGGFIDIVKVLLNEGANIED 335 ANK: domain 5 of 25, from 339 to 368: score 36.1, E = 4.7e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL+ Aa+ g++ev++ Lld+ga in mFLJ00246 339 NGHTPLMEAASAGHVEVARVLLDHGAGINT 368 ANK: domain 6 of 25, from 373 to 402: score 29.2, E = 0.00057 *->dGrTpLHlAaengnlevvklLldkgadina<-* ++L lA+++g+l++v++Ll++gad + mFLJ00246 373 FKESALTLACYKGHLDMVRFLLEAGADQEH 402 ANK: domain 7 of 25, from 406 to 435: score 30.2, E = 0.00028 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +T+L+ A++ g++ev++lLld+ga +n+ mFLJ00246 406 EMHTALMEACMDGHVEVARLLLDSGAQVNM 435 ANK: domain 8 of 25, from 439 to 468: score 25.2, E = 0.0089 *->dGrTpLHlAaengnlevvklLldkgadina<-* +pL lAa+ g++e++ lL+++ga++++ mFLJ00246 439 SFESPLTLAACGGHVELAALLIERGANLEE 468 ANK: domain 9 of 25, from 472 to 501: score 38.8, E = 7.3e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL+ Aa++g++e+v lLl ga+ina mFLJ00246 472 EGYTPLMEAAREGHEEMVALLLAQGANINA 501 ANK: domain 10 of 25, from 506 to 535: score 23.5, E = 0.029 *->dGrTpLHlAaengnlevvklLldkgadina<-* T+L lA++ g ev+ +L+++gadi++ mFLJ00246 506 TQETALTLACCGGFSEVADFLIKAGADIEL 535 [output cut off at A = 10 top alignments] //