hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm02140/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00246 ( 1454 res) mpm02140 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 635.6 2.8e-187 25 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/25 206 238 .. 1 33 [] 2.7 84 Ank 2/25 239 271 .. 1 33 [] 16.9 0.49 Ank 3/25 273 305 .. 1 33 [] 32.2 1.2e-05 Ank 4/25 306 338 .. 1 33 [] 29.0 0.00011 Ank 5/25 339 371 .. 1 33 [] 40.1 4.9e-08 Ank 6/25 373 405 .. 1 33 [] 29.5 7.5e-05 Ank 7/25 406 438 .. 1 33 [] 31.8 1.6e-05 Ank 8/25 439 471 .. 1 33 [] 26.2 0.00078 Ank 9/25 472 504 .. 1 33 [] 50.1 4.8e-11 Ank 10/25 506 538 .. 1 33 [] 20.1 0.053 Ank 11/25 539 568 .. 1 33 [] 26.7 0.00054 Ank 12/25 569 601 .. 1 33 [] 30.2 4.8e-05 Ank 13/25 602 634 .. 1 33 [] 36.5 6e-07 Ank 14/25 636 668 .. 1 33 [] 24.7 0.0022 Ank 15/25 669 701 .. 1 33 [] 20.3 0.045 Ank 16/25 1056 1088 .. 1 33 [] 26.1 0.00083 Ank 17/25 1089 1121 .. 1 33 [] 37.5 3e-07 Ank 18/25 1123 1155 .. 1 33 [] 26.8 0.00051 Ank 19/25 1156 1188 .. 1 33 [] 33.1 6.2e-06 Ank 20/25 1191 1223 .. 1 33 [] 36.4 6.3e-07 Ank 21/25 1225 1257 .. 1 33 [] 30.3 4.5e-05 Ank 22/25 1258 1289 .. 1 33 [] 3.1 71 Ank 23/25 1292 1324 .. 1 33 [] 28.3 0.00018 Ank 24/25 1325 1357 .. 1 33 [] 45.1 1.6e-09 Ank 25/25 1358 1394 .. 1 33 [] 8.0 14 Alignments of top-scoring domains: Ank: domain 1 of 25, from 206 to 238: score 2.7, E = 84 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* L A++ g+++ v+ Ll+ G ++n ++ mFLJ00246 206 VDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTE 238 Ank: domain 2 of 25, from 239 to 271: score 16.9, E = 0.49 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++ L lA++ g++e+++ Ll A++ + + mFLJ00246 239 EGESLLCLACSAGYYELAQVLLAMHANVEDRGN 271 Ank: domain 3 of 25, from 273 to 305: score 32.2, E = 1.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL+ A++ g+l++vklLl + Ad+n q mFLJ00246 273 GDITPLMAASSGGYLDIVKLLLLHDADVNSQSA 305 Ank: domain 4 of 25, from 306 to 338: score 29.0, E = 0.00011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A+ g +++vk Ll+ GA++ ++ mFLJ00246 306 TGNTALTYACAGGFIDIVKVLLNEGANIEDHNE 338 Ank: domain 5 of 25, from 339 to 371: score 40.1, E = 4.9e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL+ Aa+ g++ev++ Ll++GA +n + + mFLJ00246 339 NGHTPLMEAASAGHVEVARVLLDHGAGINTHSN 371 Ank: domain 6 of 25, from 373 to 405: score 29.5, E = 7.5e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +++L lA+++g+l++v++Ll++GAd +++d mFLJ00246 373 FKESALTLACYKGHLDMVRFLLEAGADQEHKTD 405 Ank: domain 7 of 25, from 406 to 438: score 31.8, E = 1.6e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + T+L+ A++ g++ev++lLl+ GA +n+ d mFLJ00246 406 EMHTALMEACMDGHVEVARLLLDSGAQVNMPAD 438 Ank: domain 8 of 25, from 439 to 471: score 26.2, E = 0.00078 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* ++PL lAa+ g++e++ lL+++GA+l ++d mFLJ00246 439 SFESPLTLAACGGHVELAALLIERGANLEEVND 471 Ank: domain 9 of 25, from 472 to 504: score 50.1, E = 4.8e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL+ Aa+ g++e+v lLl qGA++naq+ mFLJ00246 472 EGYTPLMEAAREGHEEMVALLLAQGANINAQTE 504 Ank: domain 10 of 25, from 506 to 538: score 20.1, E = 0.053 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L lA++ g ev+ +L+++GAd+ + mFLJ00246 506 TQETALTLACCGGFSEVADFLIKAGADIELGCS 538 Ank: domain 11 of 25, from 539 to 568: score 26.7, E = 0.00054 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL+ A++ g+le+vk+Ll +GA+++a++ mFLJ00246 539 ---TPLMEASQEGHLELVKYLLAAGANVHATTA 568 Ank: domain 12 of 25, from 569 to 601: score 30.2, E = 4.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A+++g+++v+ Ll++GA l + mFLJ00246 569 TGDTALTYACENGHTDVADVLLQAGAHLEHESE 601 Ank: domain 13 of 25, from 602 to 634: score 36.5, E = 6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL+ Aa+ g+l v++L+s+GA++n + mFLJ00246 602 GGRTPLMKAARAGHLCTVQFLISKGANVNRATA 634 Ank: domain 14 of 25, from 636 to 668: score 24.7, E = 0.0022 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + T lA+ g+l vv+lLl +GAd+ ++ + mFLJ00246 636 NDHTVVSLACAGGHLAVVELLLAHGADPTHRLK 668 Ank: domain 15 of 25, from 669 to 701: score 20.3, E = 0.045 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T L Aa+ g+++vv++Ll++ ++ + mFLJ00246 669 DGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPT 701 Ank: domain 16 of 25, from 1056 to 1088: score 26.1, E = 0.00083 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L lA+ g++e+v+ L+ + A + ++d+ mFLJ00246 1056 NHDTALTLACAGGHEELVSVLIARDAKIEHRDK 1088 Ank: domain 17 of 25, from 1089 to 1121: score 37.5, E = 3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPL lAa g++ vv+ Ll++G d+ aq mFLJ00246 1089 KGFTPLILAATAGHVGVVEILLDKGGDIEAQSE 1121 Ank: domain 18 of 25, from 1123 to 1155: score 26.8, E = 0.00051 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lA++ g+ evv lLl +GA+ +++ mFLJ00246 1123 TKDTPLSLACSGGRQEVVDLLLARGANKEHRNV 1155 Ank: domain 19 of 25, from 1156 to 1188: score 33.1, E = 6.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lAa+ g+++++k Ll++GA++n ++ mFLJ00246 1156 SDYTPLSLAASGGYVNIIKILLNAGAEINSRTG 1188 Ank: domain 20 of 25, from 1191 to 1223: score 36.4, E = 6.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G +PL+lAa++g++ vklLl+ G d+naq mFLJ00246 1191 LGISPLMLAAMNGHVPAVKLLLDMGSDINAQIE 1223 Ank: domain 21 of 25, from 1225 to 1257: score 30.3, E = 4.5e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L lA++ g++evv+lLl++ A++ ++ + mFLJ00246 1225 NRNTALTLACFQGRAEVVSLLLDRKANVEHRAR 1257 Ank: domain 22 of 25, from 1258 to 1289: score 3.1, E = 71 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* P + Aa+ g++ev + Ll++GAd+na mFLJ00246 1258 LVLHP-MEAASGGYAEVGRVLLDKGADVNAPPV 1289 Ank: domain 23 of 25, from 1292 to 1324: score 28.3, E = 0.00018 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L +Aa +g+++ ++lL+++GA ++++++ mFLJ00246 1292 SRDTALTIAADKGHYKFCELLINRGAHIDVRNK 1324 Ank: domain 24 of 25, from 1325 to 1357: score 45.1, E = 1.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL lA+ g+ +vv+lL+++GAd++a d+ mFLJ00246 1325 KGNTPLWLASNGGHFDVVQLLVQAGADVDAADN 1357 Ank: domain 25 of 25, from 1358 to 1394: score 8.0, E = 14 *->dGfTPLHlAalrgnlevvklLls....qGAdlnaqdd<-* TPL+ A ++g+++vv++L+++ ++ d+ mFLJ00246 1358 RKITPLMSAFRKGHVKVVQYLVKevsqFPSDIECMRY 1394 //