hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05008/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00241  ( 629 res)   mpm05008

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Fucokinase   L-fucokinase                               159.8    4.7e-44   1
GHMP_kinases GHMP kinases putative ATP-binding protei    20.1      0.002   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Fucokinase     1/1       1   252 [.     1   461 []   159.8  4.7e-44
GHMP_kinases   1/1     476   612 ..     1   314 []    20.1    0.002

Alignments of top-scoring domains:
Fucokinase: domain 1 of 1, from 1 to 252: score 159.8, E = 4.7e-44
                   *->aGGdSrRlPnanplGKiFtpLPvlaaenPqgPVplLgdPIYnlLaLk
                          S+             p+P              +          
   mFLJ00241     1    ----SQK------------PMP--------------FM--------- 8    

                   lamyqrfpkqgppGvntlvtsgDDIellsvgdaplisldefdgativavP
                         +p +       l++            +p + ++e          
   mFLJ00241     9 ------IPHHI---R--LICV-----------CPPQFMPE---------- 26   

                   ssLavAtnHGVfVtdkkgslkedleyrlvddlLqKPTveelvqfnavsrd
                       ++t   V    + gsl                              
   mFLJ00241    27 ----LGTR--VPPREPCGSL------------------------------ 40   

                   GlfllQDFaGGDtGilslsgeavYTesLlaldlksakmllsyyelDigal
                       +      ++G++++s+e++  e+Lla+++++++++++y++lD+ga+
   mFLJ00241    41 ----Q------VSGVVFFSVETA--EHLLATHVSPPLDACTYMGLDSGAQ 78   

                   kvelslYeDlllAlgPsatrehfLaGRPprltsrevkeesvlklgRqklf
                   +v+lsl++D+ll+++++++re+fLaGRPp+l++++++++s+lk++R++l+
   mFLJ00241    79 PVQLSLFFDILLCMARNMSRENFLAGRPPELGQGDMDVASYLKGARAQLW 128  

                   sllkgtsLnvvvlpdgeFyHfGTsatEvLdhltsdqsglrsqrrvgvrkl
                   ++l++++L++v++pdg++++++T+atE+L++lt++        +v+v+++
   mFLJ00241   129 RELRDQPLTMVYVPDGGYSYMTTDATEFLHRLTMP--------GVAVAQI 170  

                   ssspaitacdiaatcvilsslidsgvsvgpdSlWvedShLggevriGsqc
                   ++s+++++++++atc+++s+l++++v++gp+S+ ++++hL+g++riG++c
   mFLJ00241   171 VHSQVEEPQLLEATCSVVSCLLEGPVHLGPRSV-LQHCHLRGPIRIGAGC 219  

                   IVsGvdilhsealpaeiistSsrFeLPDrvClGleVrlvgslerVtvlfG
                   +Vs                                               
   mFLJ00241   220 FVS----------------------------------------------- 222  

                   lqDnlKgsvkkLeDIdaltFlGksflsvLkklgIkdtDlwsstnPksdrc
                                                     +d+Dlw++++P+sdrc
   mFLJ00241   223 ----------------------------------RDWDLWDPDTPPSDRC 238  

                   LwtArlFPVltsle<-*
                   L+tArlFPVl++++   
   mFLJ00241   239 LLTARLFPVLHPTR    252  

GHMP_kinases: domain 1 of 1, from 476 to 612: score 20.1, E = 0.002
                   *->gvkieiesniPlsdGkeVgaGLGSSaAlavAlllAlnelfglelggl
                      g++++++s++P+      g+GLG+S+ la A+l+Al +++g     +
   mFLJ00241   476    GFELHTWSELPH------GSGLGTSSILAGAALAALQRAAG-----R 511  

                   kplsdeelaklalareaensagrHPgngggaDvaafvvaeygggial.fs
                     +  e l++   + + e  +      gg++D+   +      gi++++ 
   mFLJ00241   512 -AVGTEALIHA--VLHLEQVLT---TGGGWQDQVSGL----MPGIKVgR- 550  

                   fpkeetePaasvldpllkrelvpedgisvrlrvvdalvlvviPdelknkt
                                                                     
   mFLJ00241     - -------------------------------------------------- -    

                   searellpkelvldtgansgtgellaavalldldqvlaiglveahaleeq
                                      ++++l  +v                      
   mFLJ00241   551 -------------------SRAQLPLKV---------------------- 559  

                   vlkgaRAmlde.alkegdflalGelmnenhellralykllrnplplelea
                      ++    +e  ++eg ++        +h ll                 
   mFLJ00241   560 ---EV----EEiTVPEGFVQ-----KINDHLLLVYT-------------- 583  

                   allaalGvedrleevsnpllddleeaalaarpeggallwLaaggqnvlal
                                + ++ +++ l+++ +                     +
   mFLJ00241   584 -------------GKTRLARNLLQDVLR--------------------NW 600  

                   gaklsGaGpggfalaleke<-*
                   +a+l        +++ + +   
   mFLJ00241   601 YARLP-------VVVQNAR    612  

//