hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05043/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00240  ( 769 res)   mbg05043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_RI   Leucine rich repeat, ribonuclease inhibitor     30.1    0.00029   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_RI     1/4     129   156 ..     1    28 []    12.7      4.2
LRR_RI     2/4     190   219 ..     1    28 []     0.8    2e+02
LRR_RI     3/4     307   336 ..     1    28 []    10.0       10
LRR_RI     4/4     425   452 ..     1    28 []    16.3      1.3

Alignments of top-scoring domains:
LRR_RI: domain 1 of 4, from 129 to 156: score 12.7, E = 4.2
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++ L+ L Ls+N++ d+G   L++ L     
   mFLJ00240   129    SCVLHALILSHNPIEDKGFLSLSQQLLC    156  

LRR_RI: domain 2 of 4, from 190 to 219: score 0.8, E = 2e+02
                   *->npsLreLdLsnNklgdeG..araLaeaLks<-*
                       +sLr LdLs N+   + ++a aL + L++   
   mFLJ00240   190    ASSLRYLDLSKNPGLLATdeANALYSFLAQ    219  

LRR_RI: domain 3 of 4, from 307 to 336: score 10.0, E = 10
                   *->npsL..reLdLsnNklgdeGaraLaeaLks<-*
                      n++L+++ LdLs++ l  +Ga+aL e L +   
   mFLJ00240   307    NSHLsdLHLDLSSCELRSAGAQALQEQLGA    336  

LRR_RI: domain 4 of 4, from 425 to 452: score 16.3, E = 1.3
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L + dLs+N+  d Ga+ L++aL+    
   mFLJ00240   425    NTCLAKVDLSGNGMEDIGAKMLSKALQI    452  

//